Id Trinity | TRINITY_DN51082_c1_g1_i3 |
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Name Transcript | Ll_transcript_530021 |
Sequence | TTAATCTCCCACGTGACCCGTGGGTAATAGTGAACTTCACCCATTCCCATTCCAAACCACAACCCCTTTAAGCGATTGGAACTTAGGGTTTCCAACGGAA CCAATTACACTTTTCCATTTCGCTCTCACTCAGATTCTTAAAATGACTGGAACAAGACAGAGACAAAATCCAGAATCACCAGAGGGGAACAGTGAGCATG AGAAACCTACAGATTATGATGAGCAGGTAGACCTTGATGGGGACAATGATCAAGAAGAAGAGGAAGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGTGGA GGAAGAAGTGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGGGGAAGAGACGAAGGATGGTAGAGATATGAGTGTGCCTGATGCTAAGGATGAA GATGAGAAAAAGAAACATGCTGAGTTTCTTGCTCTTCCACCACATGGTTCAGAGGTCTACCTTGGTGGCATTCCTTACAAAATTTCTGAAGAAGATTTGA GGGTTTTTTGTCAATCTGTTGGAGAAGTGTCAGAGGTTAGGATTATGAAGGGAAAAGATTCAGGTGAAACAAAAGGTTATGCTTTTGTTACCTTCAAGAC AAAGGAATTGGCTTCTAAAGCTATTGAGAAGCTAAACAATTCTGAATTTAAGGGAAAAAAGTTGAAGTGTTCAACAGCTCAAGCTAAGCATAAGTTGTTC ATTGGTAATGTTCCTAGAAATTGGACAGTAGAAGATTTGAAAAAAGTTGTGGCAGGGATTGGGCCTGGAGTCATTTCGGTGGAACTATTGAAGGATCCAC AGAATTCTGGTCGTAATAGGGGGTTTGCTTTTATTGAGTATTACAATAATGCTTGTGCAGAATATTCACGGCAGAAGATGTCAGACTCAAAATTTAAACT TGACAACAATGCTCCAACAGTGAGCTGGGCCGACCCAAGGAATTCTGAATCGCCTGCATCATCCCAGGTAAAATCAGTGTACATAAAGAACCTTCCAGAA AACATCACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCACGGGAAGATCGCAAAAGTGGTTCTCCCTCCTGCAAAAGCAGGACAAGAGAAGAGCAGAT TTGGTTTTGTACACTTTGCTGAAAGATCAAGTGCCATGAAAGCATTGAAGAATACAGAGAAATATGAAATTAATGGCCAAGTTTTGGAGTGTTCACTTGC AAAGCCACAAGCAGACCAGAAGTCATCTGGGGTATCAAACTCACAGAAGCCAGTTGCACTCCCCACTTATCCACCTTATCATGGTTATGGCATGGTTGGA GCTGGTGCCTATAATGCTTTTGGTGCAGGATATGGTGCTTCTGGCTTCGCACAACCGCTGATGTACGGTGCGGGAGCTCCCCCTGCAGGCATGGCAATGA TGCCAATGCTTTTACCAGACGGAAGGATTGGATATGTATTGCAACAGCCAGCACTGCAACCGCACACTCCTACTCCAGCATCCCGACATGGCAGGAATGG TGGTGGTAGCTCAAGTGGTGGGAAACGCAGTAATGATAGTAACCATAATAACCATAATCGTGGGCGTGGTCGATTTCATCCCTACTAATTTAACTGGTTG TTTGGACCTCAAGAATCTAGGAAACCGAGTTTTGTTCCTGCTGGCTACCTATCCCAGTGCAGAAAATTAAACAGTGGCAGTGCGGATAAAAAAAAGCAGG AGAACCAATTTAGGGAAAATGATTCAGTTAAATACGTGTATATTTGTTGAAACTCAATTATTTATGCCTTTAATTCGTTTTTTCAATTCTGTGAGGAACT AATTAATGAAAGTAGATTATCTGATGTGCTATCTCATCTTTTAGCAATTTCAACCTCATGTTATTGATTCTACAGTGAACTGAGCCAAAATAGTATTGTT CTTAGACTTCAAGAAACAAGCCTTCTAATCATATTCAACATTCATCACTTTGCAATCATATGAAACAATGTTTTAATTTTTATTGTCCAAATGTAAAAAT AG BLAST |
Tissue | pods |
Gene name | LI_gene_182204; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_530021
Blastp | Heterogeneous nuclear ribonucleoprotein Q from Arabidopsis with 51.74% of identity |
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Blastx | Heterogeneous nuclear ribonucleoprotein Q from Arabidopsis with 56.9% of identity |
Eggnog | RNA binding motif protein(ENOG410XTJ5) |
Kegg | Link to kegg annotations (AT4G00830) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019425489.1) |
Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |