| Id Trinity | TRINITY_DN51082_c1_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_530024 |
| Sequence | TTAATCTCCCACGTGACCCGTGGGTAATAGTGAACTTCACCCATTCCCATTCCAAACCACAACCCCTTTAAGCGATTGGAACTTAGGGTTTCCAACGGAA CCAATTACACTTTTCCATTTCGCTCTCACTCAGTTGCATTGCAAGCTTTCGTTTTTAGATTCTTAAAATGACTGGAACAAGACAGAGACAAAATCCAGAA TCACCAGAGGGGAACAGTGAGCATGAGAAACCTACAGATTATGATGAGCAGGTAGACCTTGATGGGGACAATGATCAAGAAGAAGAGGAAGAGGAAGAAG TTGAGTATGAAGAAGTAGAGGTGGAGGAAGAAGTGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGGGGAAGAGACGAAGGATGGTAGAGATAT GAGTGTGCCTGATGCTAAGGATGAAGATGAGAAAAAGAAACATGCTGAGTTTCTTGCTCTTCCACCACATGGTTCAGAGGTCTACCTTGGTGGCATTCCT TACAAAATTTCTGAAGAAGATTTGAGGGTTTTTTGTCAATCTGTTGGAGAAGTGTCAGAGGTTAGGATTATGAAGGGAAAAGATTCAGGTGAAACAAAAG GTTATGCTTTTGTTACCTTCAAGACAAAGGAATTGGCTTCTAAAGCTATTGAGAAGCTAAACAATTCTGAATTTAAGGGAAAAAAGTTGAAGTGTTCAAC AGCTCAAGCTAAGCATAAGTTGTTCATTGGTAATGTTCCTAGAAATTGGACAGTAGAAGATTTGAAAAAAGTTGTGGCAGGGATTGGGCCTGGAGTCATT TCGGTGGAACTATTGAAGGATCCACAGAATTCTGGTCGTAATAGGGGGTTTGCTTTTATTGAGTATTACAATAATGCTTGTGCAGAATATTCACGGCAGA AGATGTCAGACTCAAAATTTAAACTTGACAACAATGCTCCAACAGTGAGCTGGGCCGACCCAAGGAATTCTGAATCGCCTGCATCATCCCAGGTAAAATC AGTGTACATAAAGAACCTTCCAGAAAACATCACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCACGGGAAGATCGCAAAAGTGGTTCTCCCTCCTGCA AAAGCAGGACAAGAGAAGAGCAGATTTGGTTTTGTACACTTTGCTGAAAGATCAAGTGCCATGAAAGCATTGAAGAATACAGAGAAATATGAAATTAATG GCCAAGTTTTGGAGTGTTCACTTGCAAAGCCACAAGCAGACCAGAAGTCATCTGGGGTATCAAACTCACAGAAGCCAGTTGCACTCCCCACTTATCCACC TTATCATGGTTATGGCATGGTTGGAGCTGGTGCCTATAATGCTTTTGGTGCAGGATATGGTGCTTCTGGCTTCGCACAACCGCTGATGTACGGTGCGGGA GCTCCCCCTGCAGGCATGGCAATGATGCCAATGCTTTTACCAGACGGAAGGATTGGATATGTATTGCAACAGCCAGCACTGCAACCGCACACTCCTACTC CAGCATCCCGACATGGCAGGAATGGTGGTGGTAGCTCAAGTGGTGGGAAACGCAGTAATGATAGTAACCATAATAACCATAATCGTGGGCGTGGTCGATT TCATCCCTACTAATTTAACTGGTTGTTTGGACCTCAAGAATCTAGGAAACCGAGTTTTGTTCCTGCTGGCTACCTATCCCAGTGCAGAAAATTAAACAGT GGCAGTGCGGATAAAAAAAAGCAGGAGAACCAATTTAGGGAAAATGATTCAGTTAAATACGTGTATATTTGTTGAAACTCAATTATTTATGCCTTTAATT CGTTTTTTCAATTCTGTGAGGAACTAATTAATGAAAGTAGATTATCTGATGTGCTATCTCATCTTTTAGCAATTTCAACCTCATGTTATTGATTCTACAG TGAACTGAGCCAAAATAGTATTGTTCTTAGACTTCAAGAAACAAGCCTTCTAATCATATTCAACATTCATCACTTTGCAATCATATGAAACAATGTTTTA ATTTTTATTGTCCAAATGTAAAAATAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_182204; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_530024
| Blastp | Heterogeneous nuclear ribonucleoprotein Q from Arabidopsis with 51.74% of identity |
|---|---|
| Blastx | Heterogeneous nuclear ribonucleoprotein Q from Arabidopsis with 56.9% of identity |
| Eggnog | RNA binding motif protein(ENOG410XTJ5) |
| Kegg | Link to kegg annotations (AT4G00830) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019425489.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |