| Id Trinity | TRINITY_DN51083_c3_g2_i15 |
|---|---|
| Name Transcript | Ll_transcript_528705 |
| Sequence | AGGGCATTATGGTCCACGGATGATGGGCATAATCGTCCATAGATGAAGGGTATTTATTCTTCTCCTTCTTCATTGAATTCAATTGTTGTAGTTGTTTCAG CATTGATTGAAGTGTAGATGGCTGTTCCCATCGAAGAAGCCATTGCAGCTCTATCCACATTCTCTCTAGAGGATGATCAACCTGAAGTTCAAGGACCTGG AGTTTGGGTATCATCTCAAAGATCTGCAACTCAGAGTCCAATCGAGTATACTGATGTTGCTGCTTATCGATTATCGTTATCCGAGGATACTAAAGCTCTT AATCACCTTAATGCCCTTACTCATGACGGAAAAGAGATGGCGTCCGTGCTTTACACGTATCGTAGTTGTGTCAAAGCGCTTCCTCAGCTTCCGGATTCTA TGAAGCAAAGCCAAGCTGACTTGTATTTGGAAACATATCAAGTTCTGGATTTGGAAATGAGTCGTTTGCGTGAAATTCAGCGATGGCAAGCATCAGCTTC CTCTAAATTAGCTGCTGACATGCAACGTTTTTCTAGGCCTGAGCGCCGCATTAATGGCCCAACTATTTCTCACTTATGGTCCATGTTGAAGTTACTTGAT GTTTTGGTGCAACTCGACCATCTTAAAAATGCTAAGGCAAGCATACCTAATGATTTCTCATGGTATAAAAGGACTTTCACACAAGTCAGTGGTCAGTGGC AAGACACCGATTCAATGAGGGAGGAGTTAGATGATTTACAGATCTTCTTGAGCACAAGATGGGCTATTTTGCTGAATTTGCATGTTGAGATGTTCCGTGT GAACAATGTAGAAGACATTCTTCAAGCTCTTATAGTCTTTGCAGTCGAGTCTTTGGAGTTGGACTTTTCACTTCTCTTTCCAGAGCGTCATACTCTTTTG CGCCTTCTGCCTGTTCTTGTTGTCCTAGTGACATCATCAGATAAGGATAGCGAGTCTTTGTACAAGAGGGTGAAAGTCAACAGACTGATCAATATATTTA AGAATGATGCAGTCATTCCTGCATTTCCAGATCTGCATCTGTCTCCTGCTGCAATTTTGAAGGAATTATCAACTTACTTCCCAAAGTTTTCTTCCCAAAC ACGGCTTCTCACCCTTCCAGCTCCTCATGAGCTCCCTTCTCGTGAGGCACAAGAATATCCTCCAAAGTTTCTTATGTTTTAATTGATAATTTGATGCTGA TCTGTTATTATTGAGTAAATGTTCCATTTCCTTGACCTGTCCTCTATCAAGAAATTGACTTTTTTTTTCATGTCTTTGAAGCTTACTATTAATCACATAC ACTGCAAATAGATGCAATGTGACTGGCATCTAAAAAAGTATGGCCCAGTACACGAGGCTCCCACCTAGTGGGGTCTTGGTAGAGTAGATCAATAGATGTA TGCAATTGTAAAAGATTGAAAAAACAATACTAAAACAGAAAGATAGAAAGATAGGAAATAGAATCAGTAACTTTTCTGATTCTCATTGAATGTAATTGAA TGAATCCTGAATACAAAGATATATCCCTATTTATAACAAGGGAAAACAGAAAAGAGGATAACTGAATCAGTAGCTGAATTATTCAGTTACTGAAAACAGA ATCCAAACAGAAAACTGAATCCTACCCTAAACAGAAAACTATTCAGATAAGCATTATTGAAACACAGTTTCATTTTAATGCTTGATCTCTAATAGCAATC TTACTCACGCAAGTAAAGAGAATGTTTTCAGGATTTGAACTCGTGACCGCCAGGCCACAAGGCAAACAACCTTACCGTGCCAAGAGTACTCTGTAGTTTA GGATATTGAATTGCATATTTTCTGTTCATTGAAGGCAAACAACCCAAGGAGGATACTTTGGTTCTTTCCATTTATGATCATTCATCATTAAAAAGTTTAG GGGAAATTATATCGACCTCTATTGAGGTTTGACTTAATTACATTTGACATCCTTCATGTTTCAGAAATTGCCGGACTTCCTTGAGGTTCGTGTTGTAATT ACACTTACACCCTTGAGGTTTATATTGTCATTACATATCCTCCTAGACGCTTGCATTGTCATTACAAGCACACACCCTTTACAAAATAAATCTTAATGGA GGTCTGTACAATTTCTAAAACAAGATGGGTGTAAGTGTCTTCTTGCTATCTCTTTAGAATGTAGCCTTGACATGAAACACGTATCAGAGGCATTATCTAA TCGTCAACCATATTGGAGCGATACGTGCAGAGCATGATGATTTCACAATTCGTTATGCTTCAGCAATGAATCAGCTGTTATTGTTAAAGTCCACTGATGG TTCTGATGTTGATTGGAGCAAAGAAGTCAAGGGGAACATGTATGATATGATTGTTGAAGGTTTTCAGCTATTAAGCAGATGGACCACGCGTGTCTGGGAA CAATGTGCTTGGAAATTTTCACGTCCTTGCAAGGATGCTTCCCCATCATTCTCTGACTATGAAAAGGTGGTACGATATAATTACAGTGCAGAGGAAAGAA GAGCACTGGTTGAACTTATGAGCTACATAAAGAGTGTTGGGTCTATGATGCAGCGTTGTGATACACTGGTTGCTGATGCTTTATGGGAAACAATACATGC CGAGGTCCAAGATTTTGTCCAGAACACATTGGCTACTATGTTGCGGACTACCTTCAGAAAGAAGAAGGACCTCTCTAGGATTCTTTCTGATATGAGGACT CTTTCAGCTGATTGGATGGCTAACACAAGCAAGTCAGAATCTGAGTTACAGTCCTCACAGCATGGAGGTGAAGAAAGCAAAGCAAACATATTTTATCCAA GGGCAGTTGCCCCTACTGCTGCTCAGGTGCACTGCTTGCAGTTCTTAATATATGAGGTGGTTTCTGGCGGTAACCTTAGGAGGCCGGGTGGACTCTTTGG GAATAGTGGCTCAGAAATTCCAGTTAATGACTTAAAACAGCTGGAGACATTTTTTTACAAGCTTGGTTTTTTCCTTCATATTTTAGACTACTCAGTGACT GTAGCAACATTGACGGATCTTGGTTTCCTATGGTTCAGAGAATTTTACTTGGAGTCTTCGCGTGTCATTCAGTTTCCAATTGAGTGCTCTCTTCCCTGGA TGTTGGTGGAATGTGTACTTGAGTCACCAAAGTCTGGTCTTCTTGAGAGTGTCCTGATGCCATTTGACATCTATAATGACTCAGCTCAGCAAGCTTTGGT GTTGCTGAAGCAACGGTTTCTGTATGATGAAATTGAGGCTGAGGTGGATCATTGTTTTGATATATTTGTTTCAAAATTGTGTGAAACTATTTTCACATAT TACAAAAGTTGGGCAGCAAGTGAATTGCTTGACCCGTCTTTCCTCTTTGCCTCAGACGATGCAGAAAAGTATGCTGTGCAGCCTATGAGGTTCAATATGC TGCTAAAAATGACTAGAGTGAAGCTACTTGGAAGGATGATTAATTTGCGAAGTTTGATCACTGAAAGGATGAACAAAGTTTTCCGCGAAAATATTGAGTT TCTGTTTGATCGTTTTGAGTGTCAGGATCTGTGTGCCATAGTGGAATTAGATAAGTTGTTGGGTGTTTTAAGACATTCTCATGAACTAATATCGAGAGAT CTTTCCGTAGACTCTTTTAGTCTCATGTTGAATGAGATGCAAGAGAATATCTCTCTTGTGTCATTTTCTAGTCGACTGGCCTCACAGATTTGGTCTGAGA TGCAAGGTGACTTTTTGCCAAATTTCATCCTCTGCAATACTACACAACGTTTTATCAGATCATCAAAGGCTGTTCCTGTTCAAAAACCCTCCATACCCTC TGCTAAGGCTAGTTTCTATTGTGGTACTCAAGATTTGACTTCAGCGCATCAAAGTTTTGCACGATTGCATAGTGGGTTCTTTGGATTACCTCACATGTTT TCTATTGTTCGAATTTTGGGATCCCGGTCATTGCCTTGGCTTATTAGAGCCCTCCTTGATCACATATCTAACAAGATAACTTCACTTGAGCCAATGATCA CAGGATTACAAGAATCCCTTCCAAAATCAATAGGACTTCTGCCTTTTGATGGAGGTGTGACAGGTTGTGTGAGACTTGTTAAAGAACATCTTAACTGGGA GACAAAGTCGGAGCTGAAATCTGAAGTTCTTCATGGCATAAAAGAGATTGGAAGTGTATTGTATTGGATGGGGCTTCTAGATATCGTGATGAGAGAAACT GATACTATGAGTTTCATGCAAACTGCTCCCTGGTTGGGCTTTCTTCCTGGAGCAGATGGGCAAATATTAACTTCTCCAGATGGTGGAGACAGCCCTGTTG TCAGCCTCTTTAAATCAACAGCTGCTGCAATGCTTTCATACCCTGGCTGCCCGTCTCCTACATCTTTTCAAATCATGTCAAAACAAGCAGAAGCTGCAGG TGTGCCAATGAACGTTTTCTATTTTTCATTGTTGGATTGACATGTTCCCTAGTAAAAAAGGTGCATAGGCTTGATGTTGCAAAATAGTTGAGAATGAGCT GAGATTGTACCTGTAGGAAATGAAATAAATAACAGAAAGAAGGAACAAGCTTCAGTTATTTATACCTGAATTTATTAAGTTATCAGCATAGTATATATAC ATTATGCATAGCTGTTATGACCTGTGAGTTATGAACATTTCCCCGAAGGAATGAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_182214; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_528705
| Blastp | Protein PIR from Arabidopsis with 79.92% of identity |
|---|---|
| Blastx | Protein PIR from Arabidopsis with 80.27% of identity |
| Eggnog | cytoplasmic FMR1 interacting protein(ENOG410XPKW) |
| Kegg | Link to kegg annotations (AT5G18410) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019418762.1) |
| Pfam | Cytoplasmic Fragile-X interacting family (PF05994.10) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |