Ll_transcript_529080

• Id Trinity: TRINITY_DN51089_c0_g1_i9
• Name Transcript: Ll_transcript_529080
• Sequence: TTGCCATCACTACTTTAGGCCCATCGTCTACTGTTTGGACCGAGCCGATAAACCCACGAGTAATTCATACCGTTCCATCGATAATAAGCGCAGCCCCGAT TTCTCCTTACGCCACCCTCTCTCTAACCGTGGAGGACCATTTCCAGAAGATCCCTAACTTTTCTTTCCTTTATTCCCAGGGATTTAGTTAGACAGAGGCT TCATTCGAGTTCTCTTTTGTATGAATATCTAAACGCTTGAAGTGTTTTTGGAATTCACACAATGCTGGGTTCATTGCCGATACTGCCTCTCCCTGCCCCT CCTCTCGATGGGAACTTGGGTCCTCTTCCCGAGTCTCAATTGACTGATGAGGAGATGATTGAGAACTCTTCCAATGAGGAGCAGAACAAATCAGATTCAG CGCCTGCAGTAGTTGCTACCCACACTAGAACTATTGGAATTATCCATCCACCTCCTGACATCAGAACCATTGTTGACAAAACCGCTCAGTTTGTGGCGAA AAATGGTCCAGAGTTTGAAAAGAGGATTGTTGCAAACAACACAGGCAATGCCAAGTTTAATTTCCTGAGCGCGTCGGATCCCTATCATGCATATTATCAG CACAGGTTGGCTGAGTTTCGGTCTCAGAATCAGTCTTCTGGTGGGCAATCCACAGACTCACCTGTTCGTGAATTAGCCCCATCTGCAACTGCCTCTGACA GCAATGACGCCACAGCAGCAGCAGCAGAAAAGCCTGATATTTCTGCTCAGTTCAAACCTGTGAGGAAAGTGCTTGAACCCCCTGAAGCTGAGCAGTACAC AGTTCGGCTTCCCGAAGGAATTACCGGAGAAGAGCTGGATATTATTAAGCTCACAGCACAGTTTGTTGCTCGAAATGGTAAATCTTTTTTGACAGGGTTG ACAAGTAGGGAAGTTAATAACCCCCAATTCCATTTCTTGAAACCAACACATAGCATGTTTACCTTTTTTACTTCTCTTGCGGACGCATATTCTAAGGTTT TGATGCCTCCAAAGGGTTTGACAGAGAAGCTGAAGAAGAGTGTCCCTGACATGACTACTGTGCTTGAAAGGTGTGTGAATAGGCTGGAGTGGGAGCGTTC GCAAGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATAGAGCAGGAAAGGGTACAAATGGCTATGATCGATTGGCATGATTTTGTAGTGGTTGAAACAATA GACTTTGCTGATGATGAGGATGAAGAGTTACCTCCTCCTATGACCATTGAAGAGGTTATAAGGAGAAGCAAGGTGACAGCCATGGAAGAAGATATCATTG AACCAGGAAAGGAAATTGAAATGGAAATGGATGAGGAAGAGGCCCAGCTTGTTGAAGAGGGCATGCGAGCAGCTAGTTTGGAAGACAATGATGGTGAAGT GAAGAATGAAGTCAGGGTTACTGAGGATCCTGAACCACCAATGAGGATTGTAAAGAATTGGAAGAGGCCAGAGGATAGGATTCTTGCAGAAAGAGATCCA ACCAAGTTTGTTGTTTCTCCTATCACTGGTGAGCTAATTCCCATTAGTGAAATGTCAGAACATATGCGTATTTCTCTCATCGATCCCAAGTACAAAGAAC AAAAAGAAAGGATGTTTGCTAAAATCCGAGAGACAACACTTGCTCAAGATGATGAAATCTCAAGAAATATTGTTGGACTTGCCCGAACCCGTCCTGATAT CTTTGGTACCACTGAAGAAGAGGTCTCAAATGCTGTCAAGGCAGAGATTGAGAAAAATGACGAGCAACCTAAACAGGTTATATGGGATGGTCACACTGGC AGTATTGGCCGTACTGCAAACCAAGCTTTGTCACAAAATATTGGTGAGGATCAAAATGATGCTTCTAATAATGAAGCCATGAACCTTCCTGGTCCTGCTG CACCTCCTCCTAGACCTGGAATGCCTTCTATTCGTCCTCTTCCACCTCCACCTGGACTAGCATTGAATCTTCCTCGCGGTCCTCTCAATGCAGTCCAGTA TTCTGCTCCTAACAGTGGTGGCTTTCAAATCCCTCAACCTAGACCTCCAGTCATGCCCATGATGCCATCTGTCCGGCCACCTCCACCTCCAATGCAAATG AGTTCTGGACAGCATATGGGTGGTCAACCACAACTAATGCATCCACCATATCAAATGAATAGCCAAGGAATTCATATTCCTCCACCACCGGGGTCCCAGT TCACGCCTATGCTTGTTCCCCGACCTTATGCCCCTGGTCCACCATCAGGAATGCCAATGATGCATCCACCACCATTGCCTCAAGGAGTGCCACCACTGCC ACCACCTGATGAAGCTCCTCCACCACTCCCAGAAGAACCAGAACCAAAGAGGCAGAAGCATGACGATTCCACTCTGATCCCTGAAGATCAATTTCTTGCC CAACATCCGGGACCTGTTCGCATTAGTGTATCTGTTCCTAACGTTGATGAAGGAAATCTCAAAGGACAGGTTCTGGAAATTACAGTTCAGTCTGTTTCTG AAACTGTTGGCAGTCTTAAGGAAAAAATTGCAGGAGAGATCCAGCTCCCAGCTAACAAGCAGAAATTGAGTGGGAAACCGGGCTTTCTCAAGGATAATAT GTCACTTGCCTATTACAATTTCAGTGGAGGAGAAACACTGACCCTAACCTTGAGAGAGCGTGGTGGTAGAAAGAGATGAGCATATTACTTGCATGGCCAT TCAAGAAGGTTGTTGTAAACTTTGCCCCATAATGAGGGGGGTTATGAGGCATATGGATTCCTATATTATTAATAGACTGTTGCTATCTTCATGAATTTTA TGTTGAATGCTTTCTGTCTATTTTATTCTGTGGTTTCTTTCGAAGTTTTTATTGTTGTCTTCAAAACTGATGTTAATTCTCAAATACAGATTTTGGCACC TTGGCGCTTGTCCATTGAGGGGGATAGGAAGTAGTGGAGTTCCTTTATCTAATTTTATCAACTCAAACTATACATGACTGATTATTGTTCTCTTTTGACA TTTCAGTTGATTTGTTCCGAAATTACTGATTTGTTTTTATTTGAAGCTCCTTCGCTGTTGGAGGGACCAGTTTACTTTTTTCCATTTTTCATATTTTGTT CATTCATGCTTGCAATGATCATCACGGAGTAGTGATTTTGGGTCTTTTGTCTTATTTTCTCCTTCTAGTGTTTAGGTTGTCTCATGTTATCGGGATATGT TCATACGAGAGTACAGGTGGGTGCTTAGAAGGCCTTTTCAGTTGCAAAGCATATTAACCTGCAACTGGTGCATCTTGTTTGGGGTTTTAGTTACAAGAAA TCCTACTTGGACTAATGGGAAAGGGCTGTGCAGCTTAGCCTGATGTGTCTTTGATTTGAGAAGAGGCAGAATGGAGCAGGTTTGGTACTTTAAGAAGGCA TGATTCATGTCTTCATTTTTTATTGGGATATCTTATGAAATTTAGTTTAAGCTACTTATTGTTTATCTTGATTAAGAATATCTGGCTATGTTTAAATCCT CTTCAGTATCCCTCTGTCTACTTTTTATTAAGCAACAG
• Tissue: pods
• Gene name: LI_gene_182249;
• Additional information: details;

Expression of Ll_transcript_529080

FPKM

• PAB: 5.5
• PNAB: 2.2
• PS1: 3.4
• PS2: 1.8
• PS3: 2.1
• PW1: 4.6
• PW2: 2.8
• PW3: 1.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_529080

• Blastp: Probable splicing factor 3A subunit 1 from Arabidopsis with 69.7% of identity
• Blastx: Probable splicing factor 3A subunit 1 from Arabidopsis with 74.76% of identity
• Eggnog: Splicing factor 3A subunit(ENOG410XPNW)
• Kegg: Link to kegg annotations (AT1G14650)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019427878.1)
• Pfam: Surp module (PF01805.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;