Id Trinity | TRINITY_DN51109_c0_g1_i10 |
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Name Transcript | Ll_transcript_461657 |
Sequence | TTCTGTAACATAACTTTATTCTCTACTCGATGGGAAGGATCATGGGCTCTTCCGTGATGGTATCAAAGAAGTATCTGAAGCTCAAAATACTCTGTACCGG AGAACATTGTGTCAAGATCTTAACAGACAAGGTGCTGTTGTTCTTGAAGGAAAAACGTTAGAATGGGAAATATATAAGCAGATATGGAGATGGAGCCACC AAGAACAGTAGCAGAAGTTCTCGCTCGGCGAAAACAAGGGGAATCTGACGGGGTTGTAGAGGAGGAGAGAAGTAACAGAATTTCTAAGATGGCCCAGATT GAGGATCTTCAGGCACAGAATGATCATCATTTTGCACCACTGTGTATCAAGGATCCTCGTGAGTATTTTGATTCCCAACAAGTTAATGCAGTAAAAACTT TGTATGATTCCCAAGCTGGAACAGAGAAAATAAGATGCAGTTTGACTTCTGAAGAAGCCTATGGCTCTTTGAGGGCGTCCATATCTAATATCAAAGCAAA AGGATTAAGAGATCCTCTATTTAGTCATGAGGTTGCTCTTAAGGTAATGACATATTTGTGTCACAATTTTTTTGTTTAAGATTAACTTTTTGAATAACTG ACAGATGGATATGGTTAAATGTTCAATATTGTACTCTTCTTTGTTTCTTTCCTATTCACAATAATTTTCACATATTGAAAATTAAATTTGTTTGTTGTTT TCCAGGCCCTTGATGGGTTGACTAAAAATATTTCAAGCACCAAATATCATCTTGGGAAAAATTCTCAGGAGAGTGTACTTGATATATTGCCCAAGGCAAC TAAGGAGAAACTATTAGATGTGAGTTAACCCCAATTGTTTCTGCAGTCTTTGAGAAGAGGGAAAAAGGAAAACAAAAAATGAATGGACGGAAAGAATGGA AGAAGAGAGCATTTGTTAATCTTATGGACTTGTACATTTAGGTTCAGAGTGTGGCATGTGTTTCTCTTATTTTCCAGCAGCAGTATAGCTTTCAATGATC TTTGAATTGTTGTTTTGGGTAGTTCTAATTGTTCTTAGTTATATTTTTGTAATACATGCTTCCTTCTTTACAGCATTGGGTGTGCAGCCAGGAATTGCTG AGGCATTTTTGGTCTTCATATCCAATTACAACACAAAACCTTGCTAGTAAGGTAAAGTTAAGCTTTTGTGATTTCAGTAACATCTTTCAATGCTGTATTC TGTACATGACTGTTGGAATAATTGGGCCTAAGTAAGGGTGTGATAAAGTCCAATATTCAATGAATAAGAGTAATGAACCATTTATGATGACTTGGGCTGC CCCATACGTCTAGTTATTTTAATAATGATCTGTCTAATATTGCACAACTAAAATTTCATAATTCTAGGATCAGTATTTGTTTGTAATTATTTTTTCAGCT CATCTATAGCATTAGCTTTTTACATGGGTGTTATCTTCATTGCTCTTTTCCCCTACTCTCTGTATCTTTCATCCAAAAGATTGGTGCATAAGTGCATTCG CAGCATGATATTATGGTTCCATAGTAGATTTATCTCTTGCATCATGAATTAAAAAAAAAATCCCTTGCATTATACAGTCTGATGTCTACATTGTGAGAAG TTCTTTGATATGTCAAACTCCTAGTCTGGTTTGTAACTATTTGCTTGCGTGATCGGTCAATAGTATATACTAGTTTTGTCAAAATTTTGCTTGACTATAG AAACTATTGCGCTGGCTCTAATCCAGATTAGTCAGTTTAATAATGACAGAGGGTGTGATATTATCTTATATACATTAGGTTACCTCTTTTGAGCCAAGTA ATTGTTAGTGACCCATTTCCCTTGAAGACGTAGCCTTTAAACCAAGCATTCACGTTCCCCTTCACATGATAGCCGCCCATTGGTTTTAATATGTTATATA GTAACTAGTAACTACTTAACTACAATCTAGGTCTTGTAAAGTTATTGAGAATCAAACCCTAAATTATTTGTCCAAGTGGCTTTGATATCATTTCGAGGAA CCGTTCAACAGAGAAATAAAGCAGGATCCTGAAATTGGTGTTAAATAATCTAAACAGTAATATAAGTAGTATGGGTAAAATGAGTCCATGATGTTCATTG ATGCCAAAGTGTGTTTAGAGGACTAGTAATTATCTACTTGTCCAATGTTTCCCTGAACCTTCCTTTCTTTTCGCCTTTATGGAACTGTACTAATTACACC AATGTTATTAACCAGCTAGGCATTCGATGAGTTGACGGGGTTTTCCTGCTAGATGTCATCCGTGGCAATGTCGATCTTACATCCATTATATTGCAGATGT AATTATATAGTGATTCATCAAGGAATCTCTGCATTGCATTTTATTATGTCTAATTAATGTCTTGTTTACTTGGGAATTAAACGCAGACCAAAAGACTTAG GGATGCCATGTCACAAGTATACTCCAAACTTGAGGAGATAAAAGTATCTGCTCAATCCGATCTGCGGCACCAGGTCTCTCTTGTTGTCCATCCTATGCAG CAGACTCTGGATGCTGCCTCATTACATTAGGAAAAGAAATGCAAAAGGACAGAAGCCTAATGGTTATGTTCAGGAGATGTTTTGCCCATTTATACTTTAA GCATTATGCTTTTAACAATTTAGGAATGTAGATTCCATCAATTTTGTCCTGACCTCAAAGCCTACAGCTATTTATCTCTATATTGTGATGAAATGGTTTT ATGTTAGAATCAGTAAGCAAGAGTCTTACTTAAAAGTTAACTTGCAAGTTGCAACATGGCATGAAAGAATACTATAGCCCATGAAAGAAGATCTCCCTGT ATTTCGACTCCTAAGTCAGAACAGATTTCGGCAAAAATAGAAAGTTTGGCTATCTTGGGCTGATGCATGTTTATTGTATGTTACCCTCAATTGCAACGAA TGGAAGTGCATCTGAAAGTGCAATAAGGCCTATAATGGCTGGTCAAACATTTCTGATGAGTTTTGTAAATGGGAACTTATTTTGAATTACATCTACGATT TTTCGATCTCGCTAAATGAGAGTATTGCATTCGACTATATTTTTTTCGGGGTCGAGTACCTCGTATATCTTTCGCGAAACAAGTTGTTCAGGTACATCCA TTAACTAAAACAGATCTTGATTGACAAAAGACTAGTGTTTCTCATAACTATAATTTTGAAGGACTATTTGGTTAATTTAGTATGTACTGATCAAATTTGG TGGCATGATTTTTCTATCTATTGTATTAGCTAAATTGTGG BLAST |
Tissue | pods |
Gene name | LI_gene_182380; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_461657
Blastp | Probable RNA polymerase II transcription factor B subunit 1-1 from Arabidopsis with 41.98% of identity |
---|---|
Blastx | Probable RNA polymerase II transcription factor B subunit 1-1 from Arabidopsis with 33.18% of identity |
Eggnog | Transcription factor(ENOG410XRI6) |
Kegg | Link to kegg annotations (AT1G55750) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019462269.1) |
Pfam | - |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |