Id Trinity | TRINITY_DN51109_c0_g1_i5 |
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Name Transcript | Ll_transcript_461652 |
Sequence | AAAAAAACCACCTAGCTTAAAGATAACAGGATGCTCTAATGAGAATATCATTTTTTTATTTGGTTAACATTAATAGTTTATGAACAATTATTGTTCTTCC TCTCCTCCACTCTCTCCACTCCCAAAGCGATTTCCGGTAACTGAAACCAATTGATCCTCAACCAAACCCTAACCGCTTTTCTCTCTTCTCAGATTGAAGC CTCAACCAAACGAAACGATGTCGTCAGGACAAGTGATTAAGCGTGCTAAATACAAAACTACTGTCAAAGATCCTGGTACACCCGGTGTCATCAAATTGAC TGGGGAAAAATTTGTTTTCCGCCCTAATGATCCCACATCACACAACAAGCTCGAAGTGGATTTCAGACTTATAAAGAGTCATAAAAACACTAAAGAGGGA TCAAACAAACCACCATGGCTTAACCTTACCCATTCACAGGGAAGTTACATTTTTGAGTTGGAAAGCTTTTCCGATCTTCATGTTTGCCGGGATTTGGTGG GTGTTGCCCTTAGCAAGCATGGGGAAGCTGCAAAAGTTATTTCTGAGGAACAACTCAGCCCTGCTGAAATGGCACTCAGGATTAAGCTACTTCAAGAAGA TAGCAAATTGCAGAAGCTTCATAAGGAACTTGTGGCTAGTGGTAAGCTGACTGAATCAGAATTTTGGGCTACAAAGAAGAAATTGCTGGATCGAGATGAA AGCAGAAAGTTAAAACAACGGATTGGTTATAAAAATTCTTTGATCTTTGATACTAAGCCTACAAGTGATGGTCGGATAAACCAGGTTAAATTTCAGTTGA CACCAGAGATAAAATATCAGATTTTTGCCCTGAAACCAGCTGTTCACCAGGCATTCCTCAAATTTGTACCTAGTAAGATGAGCGAGGTAGATTTCTGGAA CAAATATTTTAAAGCTGAATATCTCCACAGTACCAAAAATGCTGTTGCAGCAGCTGCTGAGGCTGCTGAAGATGAAGATCTTGCTGTTTTTTTGAAAGAT GATGAGATATTGGAAGTTGAATCTCGAAAGAAGGTTCGACGGGTTGATCCAACTTTAGATATGGAAGCAGATGAAGGAGACGATTACACTCATCTTCCTG ATCATGGGCTCTTTCGTGACGGTAGCAAGGAAATATCTGGAGCTCAAAATACTCTGTATCAGAGAACATTGTTGCAAGATCTTAACAGACAAGGCGCAGT TGTTCTTGAAGGAAAAACTTTAGATATGGAGATGGAGCCGCCAAGAACAGTTGCAGAAGCCCTTGCTCGACGAAAACAAGGCGAATCTGACGGGGCTGTA GAGGAGGAGAGACGTATCAGAATTTCTAAAATGACCCAGATTGAGGATCTTCAGGCACAGAATGATCATCATTTTGCACCACTGTGTATCAAGGTCCATC TTTGTCCCAAGAATTAAATGACTGATGATTGTTGTCAATGTTGTAGCACTCTTACCATCTTTTTAGTGAATAGCTCAATATAAATTGTATAATAATTAAA GAATTTTCTTTCTGGATTAAATATTGTGATTCTTATGGTGTCACTTGATCAGGATCCCCGTGAGTATTTTGATTCCCAACAAGCTAATGCAGTAAAAACT TTGAATGATTCCCAAGGTGGATCCGTGAAAATAAGATGCAGTTTGAGTTCTGAGGAAGCCTATGGCTGTTTGAGGGCATCCATATCTAATATCAAAGCTA TAGGATTAAGAGATCCTCTATTTAGTCATGAGGTTGCCGTTAAGGTCCTTAATGGGTTGACTAAAAATATTTCAAGCACCAAATATCATCTTGGGAAAAA TTCTCAGGACAGTGTACTTGATATATTGCCCAATGCAACTAAGGAGAAGCTACTAGATCATTGGGTGAGCAGTCAGGAATTGCTGAGGCATTTTTGGTCT TCATATCCAATTACAACACAAAACCTTGCTAGTAAGGTAAAGTTAAGCTTTTATGACTTCAGTAAGATCTTTCGCTGAATTCTGTACATGGCTGTTAGAA TAATTTATGAAGTCCCACATCGAATGAGTAATGAACCCTTTATAATGACTTGTGCAGCCCTTCCCCTATGAGCTAGCTATTGGGTGGAGATACGCCTAAT TATTCTAATAATGACCTATCTAATACTGCACCAATAAAATTTCATAATTCTAGGATGAGTGTTTGCTTGTGATTATTTTTCCAGTTCATCTATATCATTA GCTTTTTTTCATGGGTGTTATCTTCATCGCTCATCCCCCGTACTCTCTCTTTACATCTCATATAATGGCGGTGCATTGACATCATGAAATTATGGTTTCA CAATAGGTTAACTCTCTTGCATCATGAGAATTGAGAAGTTCTTTGACATGTCAAAATCCTAATCTGGCTTGTAACTATTTGCTTGGGTGATCAGTCAATA GTAAACCAGTTTTGTCAAAATTTTGCTTGATCATATAAACTATTGCGCTGGCTTTAATCCAGATTGGTCAGTTTGATACATTGAATCACCTTTTTAAGCC AATTAATTGTTAGTTAACCATTTGTCCTTGTAGAGATAGCTTTTGAACCAAGCATTCACTAATTCTTTTTACAACCCCCCTAACATGAAACCCCATTGGT TTTAATATGCTATATAGTAGCTACTTAGCTACAATCTAGATCTTGTAAACTTCTTGAGGATCAAACCTTAAATTATTTATCAAGGGGACTTTGATATCAT GTCATGGAACCGTTCAACTAAGAAATCAAGCAGGATCCTGAAATTGATGTTAAATAATCCAAACTGTCATATAGGTACTATGTAAAATGAGTGCATGATG TTCAATGAAGCTGAAGTGTGTGGGACTGATAATTATCTACATGGTCCGATATTTCCGAACCTTGCTTCTTTTTCCCTTTATCCAGCTTACCAATTGTGCT GATATGATTAACCAGCTAGGCATTCGTAAATTGAGAGGGGTTTTCCTGCTGGATGACATACACTATATTGCAGATGTAAAATTATATAATGATCCATCAA GGAACCTCTATGAATTGCATTTTATTTTGTCTAATGTCTTGTTCATTTGGAAATTAAATGCAGACCAAAAGACTTAAGGACGCCATGTCACAAGTATATT CTAAACTTGAGGAGATAAAAATATCTGCTCAATCAGACCTGCGGCACCAGGTTTCCCTTGTTGTCCATCCTATGCAACAGGCTCTGGATGCTGCTTTATT ACACTATGAAGCTGACATTAAGAAAAGAAATGCTAAAGGGCCTAAGCCTAATGGTTATGTTTAGGACAATGTTTTGACCCTCTCTGTGCACTTTCAACAT CATGCTTTAACAATTTAGGAATGTAGATTCCATCAATTTTGCCATGACCTCAAAGCCTACGGCTATTTATCTCTATATATTGTGATGAAATATGATTTTT TTTATTAGAATTACTGAATTGGTTTGCAAGAGTCTTACTAAAAAATTAACTTGCAACAGAGAATTAATTTACTTGCAACATAAGTTATTGTTGCTTCTCT TCAGCAGTGATACAACAATTGAAAT BLAST |
Tissue | pods |
Gene name | LI_gene_182380; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_461652
Blastp | Probable RNA polymerase II transcription factor B subunit 1-1 from Arabidopsis with 57.46% of identity |
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Blastx | Probable RNA polymerase II transcription factor B subunit 1-1 from Arabidopsis with 50.17% of identity |
Eggnog | Transcription factor(ENOG410XRI6) |
Kegg | Link to kegg annotations (AT1G55750) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019441065.1) |
Pfam | Short C-terminal domain (PF09851.8) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |