Ll_transcript_460393

• Id Trinity: TRINITY_DN51132_c0_g1_i1
• Name Transcript: Ll_transcript_460393
• Sequence: TATAATTTCAACATCATATTTGAACTATGGTAGACACAAATGATTCTTCTGGTATCATTTCTGTATAACTTAGAATATTACTTCATATTATAGGAATTAA TCCTTTTGAAAATTCATGACTTTATCACCCCTATCAGGTATTTCGAAGAATCGATTTTTTTTACTATAAGCCGACCTCGCCCGTGGTTCCGAAATACAAT ATGGGCTTGCCCGAACCGGTTCGTTGCTGCTTGTTTCGTTGATCCGTTATGCAGTAGCTCCTCTTTTGTGAAAGTGGCACCCGTCACGTGACTGAGTGAG CGTGCAAAAACGCGCCACCTCACTAACTCACACCCCTTCGTTTCTCCTTTCCCTACAACAATGAGACGCACTCCTCCGCCGCCAATCCACTTCCTCACCA CCGCCGTCACCGACAACTCCGCCGCTACTGCCACCTCCTCCATCATGTCTTCTTATCCACGTCAACGAGGACGCGGTGGAAGATTCTCCGGCCGTTCATT TTCCAGCGGCAGAGGCCAATTCGTCACCGGAGATTCTCACTTCCGCTCGGTCCGCGACGATAATTTAGGTCACCGGCGAGGCGAGAGAGGAAACTTCGTC AATCAAACGCAACCTTATCAACAAAACTCTCAGACTTTTTATCCGAGGCCTCAACCACCACTGCCGCCGCCGCCGCCTTATCAACAAAACTCTCAGTTCC GTCATCCTTATCCACCGCATCGTCCGCCTCCGGCGATTGGTCAGCAATTCCGTCCTCGACAAAAGGCGCCGGATCATAGAGAGTGGGAGGCTGCAAAGAC GCCACCACCTCCTCCTCATTGTGAACGATTTAAAGTTCTTTCCTATAATATATTGGCTGATTACCTTGCTTGGGACCACCGGAGAGCACTTTACTTTCAC ATACCCCAACACATGTTGGACTGGCAATGGAGAAAGAGAAGTATACTTTTTGAGCTTGGATGGTGGTCTGCTGATATCATGTGTTTTCAGGAGGTTGATA GATTTCATGACTTGGCAGAGGAGTTGAAGCTAAAGGGATACACTGGCATCTGGAAGATGCGTACGGGCAATCCAGTTGATGGCTGTGCAATCTTTTGGCA GATATCGAGGTTCAAGTTGTTATATGAAGAATCCATTGAGTTTAATAAGCTGGGACTTAGGGATAATGTTGCTCAAATATGCGTACTAGAGTTCATTAAT CAAAATGGATCGGTTCCATCCAGCGTGACAGGTTACAGTAAAATTGTGGTTTGTAACATTCATGTGCTTTACAATCCAAAAAGAGGAGAAATTAAACTTG GCCAGGTCAGAGTGCTACTCGAGAGGGCTAACGCTGTTTCTAAACTCTGGAATAATGCCCCTGTTGTTATCTGTGGGGACTTTAACTGTACCCCTAAGAG TCCACTGTACAACTTTATCTCTGAACAGGAGTTAGATTTGTCTGGAATAGAAAGGGATAAGTTATCAGGACAGGCTTCTGCTAAAATTCGTTCACCACCA AGGCTTGAAAGATTTTCTGGTGGTTCAGCTCAGAACGTATCTATTGAAGGTGACAAGGAAGTTAATGCAGAACAAAATAATTCTTACATGCAGAATCCTG GCACTAAGTGTAATAGTTCAGAGAATCAATATGCTCGCACTGTTCTGGATATGTCTAAATTGTCTGTGACAAATGTGCAGCATGGAAAGGAGAATGTCGC ATATGCAGGAACGGATACTCAGGAGCCTGCTATTGAACATTCTAAGAGTTTTGGTGAAGTTGGTAGCATAAAAGAAGAGCAAAATTCTTCTTATGGTGAA GTTAGGCTCCCTGTTGATAGTATAAATGCTGAGATTCATGATGTCACAGTTAGTACCTCTTCAGATACTGTCGCAGCTTTAAATCAAGAATCATTAAGCA AAGAATCCAACCTACATGTCCCTGAAGGAAATAAACATATGGAGATTAATTTCCCCCCAACCTCTCTCCAAGAAGACAACCAATCTTCCAAGGTCAAGAT AGGTCTTGAGTCAACAGATCTTCTCAATTTAGAAATCTCTATAGCTAAACCATCCAGCGAGACTTCAGTTTCCGATGCTTCTGAAGTCCTCCATCAAGGG TATAGAGAAAGCCAATCTCATGAACTCGATGTTAATGACCAAAGGAACAGCCCATCAGCCTTAGATCTTGTTGGCAAATCACATCAATCCACCAACATTG ACTTTCCACTAGATGAAAAGCTAGATAAAGCCATAATAGGCAGCGAAAATACTGGCAAAGATGACAACGCTTTCATATCTTCCTTACATAATGCCAAAGA AGGCGTAACTCTTGATCTTGGTCCATCAATTAAATCAGATTCTGCCTCCAACAATTTGTTGCTGGCTGAAGAAATCAATGAAGTGGAGGATGACTTATCT CCTAGTCCCAGTTCCAAATCAATTGATGCAGAGTACACTCCTTATAATCCATCATTGTGGACCCCTATGGAGATAGAAACTGCAACAGGAAATGTAGACT GTACCTTCTTGGAGCACCAGTTATCGCTTAGGAGCACATATACTGAAGCCATGGATTGTTCAGGGACTAGAGACCCCCATGGGGAGCCCCTAGTGACCAG TTATAATAGGAGCTTCTTTGGAACTGTTGACTACATTTGGCGATCTGAAGGTTTGCAAACAACTCGAGTTCTCGCTCCGATACCTAAACATGCCATGGAT TGGACTCCAGGATTCCCAACAAAGAAATGGGGCAGTGATCATATTGCTCTTGTTTCTGAGTTGGCAATATTGAAAGATGGCATATAGACATGAAGAAGGA GGATGTTAAATAGCAGCACTGTATTTGACATCTTAAAATCATAACATGTGGTGCCAAGCAATGAAAGAGGGAGACACTTCAAAATGGTTAGTGTTTCTGC ATCCAAATATTGCAATAATTAGAATAATAGGATTTGGATTTGTATTTTGTTCACAATGGTTTGTGCCAACTTTTAAAACATATATCTATTTAAATTTAAG ATTTATGATTTATAATAAATTTATATATGCTGTATCTGGTTTCTTAGATGGGTGAGGGTAGAGTATTTGGTAGACTTCAGAAACTGGATGGAACAATTGT TTAGTCTATTTTATCTACAATTGAACATGACAATGTGAACATCTTACATTCATTAATCTCTATCCAATGTTTTTTTGAC
• Tissue: pods
• Gene name: LI_gene_182568;
• Additional information: details;

Expression of Ll_transcript_460393

FPKM

• PAB: 2.5
• PNAB: 5.6
• PS1: 10.4
• PS2: 7.2
• PS3: 9.6
• PW1: 7.5
• PW2: 4.7
• PW3: 6.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_460393

• Blastp: Carbon catabolite repressor protein 4 homolog 6 from Arabidopsis with 54.93% of identity
• Blastx: Carbon catabolite repressor protein 4 homolog 6 from Arabidopsis with 54.17% of identity
• Eggnog: Ccr4-NOT transcription complex, subunit(COG5239)
• Kegg: Link to kegg annotations (AT5G11350)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019457883.1)
• Pfam: Endonuclease/Exonuclease/phosphatase family (PF03372.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;