Id Trinity | TRINITY_DN51132_c0_g1_i4 |
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Name Transcript | Ll_transcript_460396 |
Sequence | TATAATTTCAACATCATATTTGAACTATGGTAGACACAAATGATTCTTCTGGTATCATTTCTGTATAACTTAGAATATTACTTCATATTATAGGAATTAA TCCTTTTGAAAATTCATGACTTTATCACCCCTATCAGGTATTTCGAAGAATCGATTTTTTTTACTATAAGCCGACCTCGCCCGTGGTTCCGAAATACAAT ATGGGCTTGCCCGAACCGGTTCGTTGCTGCTTGTTTCGTTGATCCGTTATGCAGTAGCTCCTCTTTTGTGAAAGTGGCACCCGTCACGTGACTGAGTGAG CGTGCAAAAACGCGCCACCTCACTAACTCACACCCCTTCGTTTCTCCTTTCCCTACAACAATGAGACGCACTCCTCCGCCGCCAATCCACTTCCTCACCA CCGCCGTCACCGACAACTCCGCCGCTACTGCCACCTCCTCCATCATGTCTTCTTATCCACGTCAACGAGGACGCGGTGGAAGATTCTCCGGCCGTTCATT TTCCAGCGGCAGAGGCCAATTCGTCACCGGAGATTCTCACTTCCGCTCGGTCCGCGACGATAATTTAGGTCACCGGCGAGGCGAGAGAGGAAACTTCGTC AATCAAACGCAACCTTATCAACAAAACTCTCAGACTTTTTATCCGAGGCCTCAACCACCACTGCCGCCGCCGCCGCCTTATCAACAAAACTCTCAGTTCC GTCATCCTTATCCACCGCATCGTCCGCCTCCGGCGATTGGTCAGCAATTCCGTCCTCGACAAAAGGCGCCGGATCATAGAGAGTGGGAGGCTGCAAAGAC GCCACCACCTCCTCCTCATTGTGGTAACCTCCTTCACTCTCATCATTTTGACTTTAGTCTTCTCAACCTGAAGTTTTCGGAAAAGAGAAGTTATATTTCG TTATGGTCAGTTTGCAAGTTGAGTTTTGGAAATGACATGAAATACATTTGTGAGATCACTCTGAAGTCTTTTATTTCCCTCGGAAAATCATCTCGCAAAT GGACTCTTAGTGTTTGTTTGGCAAGGTGAGTCCTACGGGAGTTTACGGGCAAATCTATAGCTTATTTGACCCAAAATAAGTTCTGAGCTCTTTAATTGAG GGAGGGTTACTATAAATACTGATATTATAAATCAATTTTTAGTGGCTAAGGGCACTGTTTGGTACAACTTGCTGGTAAGTTAGATGAAAGCTTATAAGTT AGGAGTGAAAGTTTAGGAGTTGATTAGCTAGCTGTTTGAATCAGTTTCTTAACTTTAACCGATAAGCTATGCCTGCGGTAGCTGATATGCGTAAAACGGA ATGTGCCTTGAGCTTATAAGCTCATAAGTTATCTTAATTAGCTTATCAAACAGGAGCTTATAAGCTTATTGAAATAAGCCCCCTTGCCTAACCTTAACAA GTTCCTTAGTTTTGGTCTAACAAGCTAGTTATTTGCCTAGCTTATAAACTCATTGTTGGCTTTACCTAATACAAAACTTGACCGATAAGTCAAGAGCTTT CAACCTTTCACGTTTCAGACTTTTCTGCCTTCAGCTAACTTTTTAGTTTGTTTCACTGATCAGAGTCCTAGTTTAACTTTGATACATCGTTAGTGTAACA CTATCAACCTATCATATATTGTCTAGTTGTGGCAATAAATAATTGGACAACTCTGCAAAACACTTTTACATTGATATGATTTCATTATTCAAGAGTCATT ACGCATTCTTTGGCTGTACCTAAACATTTGAGAATTTTTTGTTCACTATTTGAAGAAATCAAAACCAAGACTAACAAGAATAATAAAATTATTGTTTATG AAGATGGGGTAATATTTTGGTAACTACACTCATTATTTTGACCTCATTTTCAACCTTATGGTGTATGAAGATGAAGTAATATTTTTTTGGCATTTTCTGA ATGTTTGATAACTTTTTTACTCATTGAAGAAATCAGAACAAAAAATAATTAGAAATATATCAGATAGTTTTGCTCAATATTTTCTGTTTTTTCGTTAAAA GGGTTCTTGCTTCACTTGACGGTGATGTGAGGCTATGAGGAGGGACACTTTACAGATGCTTTTAGACGCTTCTAATTATATTTTATAACTTCTTACATTT ACTTTTTAGATTGTATATTATTATATATGAAAATGCCACTGTTGTTATATAAATGTTAGCATTTTTAATGTTTACAATACTCATGCTAACTTTTGGAAAA AATATTCCTCTCTTTTAATTTAGTATTTATGTTTTTGTGTTAACTTCATATAAATTTTGTATCTTGTATCATGGCCATGTCGTGTTCTATAATTTTTAAA ATTTGCCATATTCCCGTGTATGTGTCATGTCATATCTGTATACCATGTTGTATCCGTGCTTCCTATATGGGAGGGTTTTAATTTAATGATAACGACTAGT AGCAGTAAGAACAAAAGGAACTGTGGGGTTCAGTGTTTCAATCTTTTACCAAAGGTATGCCCCAAGTAACTACATAAATCAAAATAGTTAAGTTTTGACT TTTGATGATTTGTCTTGTGGCAGAAGGATAGGCTTGAGATTGATTATTTATCAGTTGTAATGCTCCTACTCATTGTTGCTCATAGTTGATTATTTTGGAA TTCTAAATCATCCGATGAATTGGCGTGTGAACTTTTTTCGTTGTTTGACAGAACGATTTAAAGTTCTTTCCTATAATATATTGGCTGATTACCTTGCTTG GGACCACCGGAGAGCACTTTACTTTCACATACCCCAACACATGTTGGACTGGCAATGGAGAAAGAGAAGTATACTTTTTGAGCTTGGATGGTGGTCTGCT GATATCATGTGTTTTCAGGTTATCAATTTGTTACAATATTACATCACAATGCTTACTCCTTGCTCAAATTCAAATATGTTCATTTTTTTATAGAACACTC AAATATGTTCACTTAACATGTTTTTAATCATGTGATGAACCTAAGATGTTGTACCTGGAATCACATTCTATTAGAGTGATGTATTGCAAGAGAGATTCTT CGCTTATAATTACTGATGGCATACTTATTCTACCTCAGTTTCTAAAAAGTATTTAACAATTATTTCCAGTCAAGATTTTAAGTTGCATTGACATCTCAGT ATTATTTATTCCTTTCAACAATAACAACTACGCCTTAATCCCACTAGGTGGGATCGGCTACATGGATCGAACGATGACATAATGCTCTATCAAAAATTAC ATTCATTAACAAAGTATTTGAGCCTTCTGAGCTGATTTATTTATGCCTTTATATTTATAATTTTTTATCAGGCCTCCTGTCCTGATTATTGATCATTAAT TCTTAATTGTGGTTACTGCACTTATCTAATCTCAGGCCTCTGTTCCATTTTGATTCATATTATTACTTCTAGGAGGTTGATAGATTTCATGACTTGGCAG AGGAGTTGAAGCTAAAGGGATACACTGGCATCTGGAAGATGCGTACGGGCAATCCAGTTGATGGCTGTGCAATCTTTTGGCAGATATCGAGGTTC BLAST |
Tissue | pods |
Gene name | LI_gene_182568; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_460396
Blastp | Carbon catabolite repressor protein 4 homolog 6 from Arabidopsis with 42.03% of identity |
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Blastx | Carbon catabolite repressor protein 4 homolog 6 from Arabidopsis with 65.08% of identity |
Eggnog | Ccr4-NOT transcription complex, subunit(COG5239) |
Kegg | Link to kegg annotations (AT5G11350) |
CantataDB | Link to cantataDB annotations (CNT0002034) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019457883.1) |
Pfam | - |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |