| Id Trinity | TRINITY_DN51133_c4_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_459785 |
| Sequence | TTAAGAAACTAATCCTTCAAAGTGTGTGGATCTCCCTCGTAGATTTGAGTATAAGGTAAAAAAAGAAGAATGAAAATAATATTTTAGGATTTACTTTTTT GTATTCAATTTCAAATTCTACTCATGAAACAAAAACAAGATAATACAGAGTCAGGGATGAAAAGGGCCCAATAGCGCGAGAGAAAATGGCGCCGCTGAAA TCTCTGGAGAATGAGTATCCAATTATCGACTCTAATTTTCAAAGCTTTTGTGCTTCCCACACCATTTTCTCTGTTGAAGATTTCCTCCTTTACGATCTCG ATGCACTAATCGCTTTTGCCGATAATGATCACACTTGTTCACACACATTGAAGCAGGGAATTGATCAGCTTCTCTCAATAATAGATTCTCAGCAACCACC ATTGCTAAACGGCTTGCAGCTATTTGAAGATGCTAAGCAGAATAAACATGTTTTGCCCACTGGATTTGAAGGGATTGATGCATTGCTTGGAGGTGGGTTA AGTGAAGGACAATTAACTGAACTTGTTGGGCCATCCTCTTCTGGTAAGACACAGGCTTGCCTGCTGTCTGCCTCGACTGTTGCAAAACATAAGAGTTCAG TTATATACTTAGATACAAGCAACTCCTTTTCACCGCAGCGTATTGCACATTTGGTTGGTCAGACATCTGGTTATGTCTTTAACAGCCAGGCTGATCATAG ATATCTCCAAGAAGTATTGGACAGGATAATCTGCTACTCAGTGTTTGACCTCTATCAAATGTTTGATGTGCTGCATCAACTGAAGATGAAGTTGAAATGC CAGGTTCTAATTGACTGGAATATTTGATGCTGGTGCAACGTAGTCGGTTATGTATTTCTTTCTATGAAATAAATGGCTACTGTATCACAGATTGGCAAAT CAGATTGTCATGTTCGATTGCTTATTGTTGATTCAATATCTTCACTGATTACCCCTATCCTTGGGGGCAGTGGTCCTCAGGGACATGCGATGATGATATC TGCTGGGAATTTATTGAAAAGGTTGGCGAATGAGCATAATATCGCAGTACTGGTAACGAATCATGTGGTGGGAGGAGAAGGTGGTACTTCCAAACCAGCA CTTGGAGAGAGTTGGAAGAGTGTACCACATGTGCGACTTCTGCTTTGTCGTGACTATGGAAGCAATGTTGCCAATATTTCAATACTAAAACACCCATCTA TGGCATCTGGTAAGACAGCAAGTTGGACCATGTATTCTTTCGATGACAAAATGTAAAGCTTGTGAGGCTGTTAATATAACTGAGGAGTTACTCAAGTTGA CCAACAACGTTATTTCAAGGATGATGTTGGGGGAAGCAGAGGAGGCTAGGGATGTGGTGCGTGGCGTGACACAGATCTTCGGGGAGTTTAATGTTTCAGA TTTTATTTGGTTGTTCAAGAAGTTGGACCTTCAGGGGTTTGAGAAGAGGATAGAGGACTTGTTTCAGAGGTTTGATACACTTGTGGAAAGGATTATTAGC AAAAGAGAGGAGATTAGGAAAAATAAAAGGGTCAAAAATGGTGAAATAAGGGACTTTCTTGATGTCTTGCTTGATTGTGTGGAGGATGAGAGCTTAGAGA TTAAGATTAACAGGATTCACATTAAAGCTTTAATTATGG BLAST |
| Tissue | pods |
| Gene name | LI_gene_182586; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_459785
| Blastp | DNA repair protein RAD51 homolog 4 from Arabidopsis with 51.18% of identity |
|---|---|
| Blastx | DNA repair protein RAD51 homolog 4 from Arabidopsis with 51.44% of identity |
| Eggnog | Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (By similarity)(COG0468) |
| Kegg | Link to kegg annotations (AT1G07745) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019454024.1) |
| Pfam | recA bacterial DNA recombination protein (PF00154.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |