Ll_transcript_460457

• Id Trinity: TRINITY_DN51152_c2_g2_i14
• Name Transcript: Ll_transcript_460457
• Sequence: AGACGAGAAAACGAGGTCGGTGCTTCTGCTCCGTCACGAAAATAAAACGAAATGACCAAAATACCCCGAAATGGTATTTTTCGTAACATGGTTGCAAAAA AATGGAGAAATTGAACCTTATCTGTGAAATTGTGAATGAATAACTATTTAGTGCGTGGAAGTGAAAGCTGTTATTTTTCTGAAACCGGTTTTTTCTTTTC TTTCTGGTGTTCAAAATCCTCCGAGAAAGTTCATACTTCGGAGTCTCCAAGAAAAATAAATTGAAGGAGGAGGATTAACAACATCATCAAAGTATAGCAC GGGAATTTAACAACATCTTTTACATAAAAGGAACAAGGAAAAATCGAAATCCCCATAATTTTTTTCAGCCTCGAGATTTTTGGTTCTGAATCTTGATATT GTTGATTCAATAACGGTAATCAGTAGGTGTTGGAGGAACAATTTATGTGTATATAATCGGGGTTGTTTTCATTGAAAGCAAGGGTTTGACTTTGATTTTT CGGCACCAGAGAAATGAATGTGGTAGGAAAAGTTGGGAGCTTGATAACCCAAGGTGTGTACTCAGTTGCTACTCCTTTTCACCCTTTTGGTGGGGCTGTT GATGTGATTGTTGTTCAGCAACAAGATGGGAGTTTTAGGAGCACCCCTTGGTATGTTAGGTTTGGTAAATTTCAAGGGGTTCTTAAAGGCGCCGAGAAAT TTGTTCGTATAAATGTTAATGGCGTTGAAGCTAATTTTCATATGTATCTTGATAATTCTGGGGAGGCTTATTTTATCAAAGAGGTGGATGATGATGAAGG AATTGAGTCAAATGGGGTTGTTCAAGATTCTACTAACAACACCGATAGTTTTTTAGGGAATGTGCATAGACTTGATCATAGCATTTCTGATACTGGGGTG CTTCAGTTGAAAGCTGAAGGTCATTCCTCGGTGTCGCCTCTACTTCAAAGGGCAGAATCTGATGGTGACAGGAGGTTTTACGATTTCCAAGATGACCGAT CTTCTTTCGAAGATCCAACTGAGTTGCCAGAATATGGTCCTAATGAGAGTCTAGAGGGAGAAAAATTTGAGGACTCACATGGTTCCCATCCAGAGATGGT GTTGGTGAGTGTGGATGGTCATGTATTGATGGCCCCTATCTCAGAATCAGAGCAGAATGAGGAGAATGTGCAGCTAAAAAATCCTCAATTTCATCTGGGC CCAGCTGAAGAGACTGACTTATGTGAAGACGGTGAAGAGTTTAGTTCTGGTGAAAATGCTTGGGCTGCTGATTACATTAGTAAGCTGGATGCTCCAACAG CTAATGTTTCACCCAAACACAATGTTGCTAACGGTGATGATAGTACTTCTGAGATCCCTCTGGAGGTTCGTAAAGCAGAGGAGGGACATATTTGTCAAGC ACGGGAATCCTTGGAGATTGATCATCATGTGCAAACTGATTCAGAAGGTGTGACGTATGGTTTAGAGAAGGGGAATGTTTTTAAAAGCTGTTTGGAGCTG CAAGAACTTGCTCAACAGGCTGGAAATGCTGATATACCAGTTCTAGGTTCATTATTGGAGGTTCAAAATTCGGCAGAGGAATCTAATGCAAGGTGTCCAC CTGTTAATGAAAATGAACGACTAAGCATTGTACAATCTGATAACATTGATGAGTTATCTCTTTCTCGTGGTTTTGCTTCTTCTGATGGCCATATATCTTC AAAATCAGAATTGGGACTTGAAGAGGCTGAGAGAACTGCATCAGGAGAAGTTGAAATTGCTCCTGATGGTCATTCTGCTACTATCGACATTGAACAGAAT GGTGAAAATGTTGGCAAGACAGCATCAAGCAATGAGGTAGATTCGAACCAACAAACCCCTGCACTTGAAGATATGAATAATAAAAGCGAGGCAGTGAAAC CTCAAATAGAAACTTCAAATAAAGGGGACCAAAGTCATTCAGGTTTGGGATTTGAGATCTCATTATGTGGTCATGAACTTAAGGCGGGTATGGGTTTAGT AGGTACTGCTGAAGTGTTTGAAGCACATAAGATATCTGCAGTGGACTTTACAAGTTCTGCACCTTCATTAATTAAGAATCAAAATCTTGTTGTCAAGTTT AAAGATAGGTACTTGACATGGGAAAAGGCTGCTCCTCTTGTTCTTGGAATGGCTGCATTTGGTTTAGATTTACCTATTGAGTCCAAAGATACAATTCCTG TGGAAGAGGATTATGCACAGAAGTCTAAGGATGGTGGTCCTGGAACATCTTCATCTGGACGCAGATGGAGACTTTGGCCTAATCCTTTTCGAAGAGTCAA GACAGTTGAGCACACTGATAGCAACTCATCAAATGATGACATATTTCTAGATTCTGAGTCCGGATTTTTCATAGAGCCAACTCCAACGTCCAGTACCCAG GGATCCCCTCGTAAACAACTCGTAAGGACAAATATTCCGACTAATGAGCAGATAGCATCGCTGAATCTCAAAGATGGTCAAAATTTGATAACATTCAGTT TCTCTACAAGGGTTCTTGGAACACAACAGGTTGATGCTCATATATACTTATGGCACTGGAACACAAGAATCGTAATTTCAGATGTTGATGGAACTATTAC CAAGTCTGACGTTTTGGGGCAATTCATGCCTTTAGTTGGAAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTCCGCCATTAAGGAAAATGGGTAC CAACTACTGTTTCTGAGCGCCCGTGCAATTGTCCAGGCATATCTAACCAGGAACTTCTTGCTTAACCTGAAACAGGATGGAAAAACCTTACCAAATGGAC CTGTTGTTATTTCACCTGATGGATTATTTCCTTCACTTTACCGAGAAGTAATAAGAAGAGCACCTCATGAGTTCAAAATCGCTTGTTTAGAGGATATCAA AAGACTTTTCCCTTCTGATTATAATCCTTTCTATGCGGGATTTGGGAATAGAGATACAGATGAGATCAGTTACAGTAAAATCGGAATCCCCAAGGGCAAA ATTTTTATTATCAACCCTAAGGGTGAGGTGGCTATTAGCCAACGCATCGGCGCAAAATCTTATACGTCATTACACACACTCGTCAACGACATGTTTCCCC CGACTTCTTTGGTCGAGCAGTTGCAGGAGGACTTCAACTCATGGAATTATTGGAAAATGCCCTTGCCAGATATTGAGTAGTTGAATGCTTATGATATTAA ATTCCTTCTGACAAGGATCTATTGGTATATGTAACAGTCCAAAATGCCATCAATATCAAAGTGCAACACATTCCTCCTACTTGACCCATTTTTTGTGCCA TATATTGGATTCATTGTGGGCATTCAATACCCATCAACAGAATTGTTGAACATTTTCCTTACATCTTCTTGTATTGTAGACCTTGTATATTTTAAATTGA GGACAATCAGGGAATAATTGCATTGATGCTTACAAAAGAAACTGTCTTTGTCTCCAGTTCTAATTATGGGTTGGGCGTGTGGGCCTAAGTACTTATACAA CTTCATCATAAATCTTAATCTAGTATTAATGCTTAAAT
• Tissue: pods
• Gene name: LI_gene_182771;
• Additional information: details;

Expression of Ll_transcript_460457

FPKM

• PAB: 9.6
• PNAB: 8.1
• PS1: 11.5
• PS2: 7.5
• PS3: 8.6
• PW1: 11.4
• PW2: 7.2
• PW3: 7.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_460457

• Blastp: Phosphatidate phosphatase PAH1 from Arabidopsis with 53.6% of identity
• Blastx: Phosphatidate phosphatase PAH1 from Arabidopsis with 53.6% of identity
• Eggnog: phosphatidylinositol transfer protein(COG5083)
• Kegg: Link to kegg annotations (AT3G09560)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019428304.1)
• Pfam: lipin, N-terminal conserved region (PF04571.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;