| Id Trinity | TRINITY_DN51175_c4_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_461757 |
| Sequence | TTTGAATATCTCTTATTATTCATATAGTGGTTCCATATGTTGTCATCATATCTTTTATTTTCTATTCATTTTTGGTGGACAACTTAGTGATGAAGTACGA ATTCATTTGTGAAAAATGCTTTCATATTTAACGAAACGGATGTCATGAATTTTACATGCAGGATGTGGGCATGAGCTTTGTGTAAGCTGTGCTCTCCATC TTTGTTCAACAAGCAATGGTTCTCGTGACATCGTTAGCCCTCCTGGTTCTATCCCTTGCCCCCTTTGTAGGCACGGGATTGTGTCGTTTGTCAAGTTACC AGGTTCTCAAGCAAAAGAAAATAAACAGAATGTGTCTCTCCGCCTGTGTACACCATGCATGCTACATCCACGTGATGTACATCGACCAGCCCTTTCTCAT GCATCAGAGATTAGGAGAAATCGTGTAGCTTCTGTTTCTTCAGAGACGATCTGTTCCATCACTTGTACTCCATTTCCATCTATGGCAATTCCTCTATGTA CTTGCAACGGTGGTTCTTGTCCATCATTTCAATCCCGTGAAGTAGAAACTGGAGATGAACCTTCTCATAGCTCACAAGCGTCAGCATTGGATCAGAATAA AACGGAGGGGCCAAGAGTAGAAAAAACATCATGTACAAACATGTTTCGGGCTAGAAGAAGTTGCAGCAGAGAGCATCGTTGCGATTCAGAAATAAATACT GGAACTCAGTAGGTAAGAATATGCATAGTAATATAAAATTTTAGATCAAAATAGAACTGCACAGCTATCTCATAACCAGCTTCCAATAGTTAAAGCTAGT GGATATATCAAAGAAAAAAGATGCTTCCAACATTTGTTTTGCGAGTGTAATATCTATGTGCCGTAAGTGTAAAGATTTATACACAGTCAATAAATCATTC ACCATTCATTTGTATTAATTTTTTGAAGAGTCAATGATGATTAAATATGAACGGCGAATGATACAGTAACAGTGTATAAAACTCATACGCTGTCAGTGCA TACATTTTCTCTCGTTTTGCTACAATGGTTGCATAGTAGATGGTAAATAATATTCTTGCATTTTAGCATCCCCATCACCTTTTTAGTTCTCATTTATAAT ATTTTATAGAGGGTTTGTAAAAATTCATATGATCCAATTGTTATTCTAATTGGGTGTCATTTTATGAGAAAAAGAAGTATTTCTCAAGAGGAAGAATAGA AAAAATAATACCCTTATGGTTTAGCTTAGTTAAATATCAAATTAGGGGGTTTGTATTTAATGCTTGTTAGAAATTGTATACTTTTACAAAGAACAAAATT GAGTATGAAAAAGGGGTATTGTTGATGCATTTGAATATGACCATGTTGTGTGATTGATGGTGTTTCTTCCTTCACTCTGGCTCTTGCATTTTACACTAAA TCACTACATATTCAATTTTAAGGAAAAGAAAAGGTAGAAAATAAATATGGGAAGTATGTTTCACTTTTTTGTTTTCCTGAAAAAGGAAAATGTAGGAGTT GGGCAAAGAATGGAAGTTTTGTAAATTTTGCGGGTTTATATTTGGTGACCTATAAATAACAGTGACTTTGTGCATTTAATGAATG BLAST |
| Tissue | pods |
| Gene name | LI_gene_182957; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_461757
| Blastp | Probable E3 ubiquitin-protein ligase XBOS33 from Oryza sativa with 42.98% of identity |
|---|---|
| Blastx | Probable E3 ubiquitin-protein ligase XBOS33 from Oryza sativa with 47.78% of identity |
| Eggnog | Ankyrin Repeat(COG0666) |
| Kegg | Link to kegg annotations (9266159) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019464952.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |