Ll_transcript_459930

• Id Trinity: TRINITY_DN51199_c0_g1_i6
• Name Transcript: Ll_transcript_459930
• Sequence: ATTTTATATACGGTTATTTTATCATTTACAATTTTTTAAGTATTATTAACTCTTAATAATAAAAATCAATGATAGATAATCCTCGTGAATGAAAAAAATA TATACCTGTGAATGTCCCGGCTCGGACGGACATAGTACCTCCTGCTACTAAAACGACGGCGTTGATGAAACAGCGATTTAGTTATCTTCCTTCTCAATTC TCATTATTCAATTTGTTTGGGAAAGTGAGAGAAGATGAGTCGAAACGATTCCAAGTATTTCTCTACCACCAAGAAAGGTGAAATCCCTGAGCTCAAAGAA GAACTCAATTCTCAATACAAGGACAAAAGAAAAGATGCTGTGAAAAAGGTTATTGCTGCAATGACTGTTGGGAAGGATGTCTCATCGTTGTTCACAGACG TGGTGAACTGCATGCAAACAGAAAATTTGGAACTTAAAAAGCTAGTCTACTTATATCTGATAAATTATGCAAAGAGCCAACCTGACCTAGCAATACTTGC AGTAAATACATTTGTGAAGGATTCACAAGATCCAAATCCTTTGATTCGTGCCTTAGCTGTGAGGACAATGGGATGCATTCGCGTTGATAAAATTACTGAA TATCTATGTGATCCCCTTCAAAGATGCCTAAAGGATGATGATCCATATGTTCGTAAGACAGCTGCCATTTGTGTTGCCAAACTTTATGACATAAATGCTG AGTTAGTTGAGGACAGGGGCTTTTTGGAATCCCTGAAGGATCTGATATCAGATAATAATCCAATGGTTGTAGCTAATGCAGTAGCAGCGCTTGCTGAAAT TCAGGAAAATAGTACTAGACCCATTTTTGAGATCACAGTTCCCACATTGTCAAAGCTCCTTACCGCTTTAAATGAATGTACAGAATGGGGTCAAGTTTTT ATATTGGACGCTCTTTCAAGATACAAGGCAGCTGATGCCCGCGAAGCAGAAAACATAGTAGAAAGAGTTACTCCACGGTTACAACATGCAAATTGCGCAG TTGTTCTGTCAGCTGTTAAGATGATCCTTCAACAAATGGAGCTGATCACCAGTACTGATGTGGTTCGGAATCTTTTCAAAAAGATGGCCCCTCCTCTTGT TACATTACTCTCTGCAGAACCTGAGATACAATATGTAGCACTGCGGAATATCAATCTTATAGTACAAAGAAGACCAACAATTCTTGCTCATGAAATTAAG GTGTTCTTCTGCAAGTACAATGATCCTATCTATGTGAAAATGGAAAAATTGGAGATTATGATAAAACTTGCTTCAGACCGAAATATAGACCAGGTTTTGT TGGAATTTAAAGAGTATGCCACTGAAGTTGATGTAGATTTTGTTAGAAAGGCTGTTCGTGCAATTGGTCGTTGTGCTATCAAATTAGAGAGAGCAGCTGA GCGTTGCATTAGTGTTTTGCTCGAGTTGATCAAGATAAAAGTAAATTACGTGGTTCAAGAGGCAATCATTGTTATCAAAGATATATTTAGAAGATATCCC AACACATATGAGTCCATAATTGCTACACTTTGTGAGAACTTAGACACCTTGGATGAGCCGGAAGCCAAGGCATCAATGATCTGGATTATTGGTGAATATG CGGAAAGAATTGACAATGCTGATGAACTTCTCGAAAGTTTCTTGGAAAGTTTCCCCGAAGAACCTGCGCAAGTCCAACTACAATTGCTGACTGCTACTGT CAAACTTTTCCTCAAGAAGCCAACTGAGGGACCACAGCAGATGATTCAGGTTGTTTTGAACAATGCCACTGTGGAGACAGATAATCCTGATTTGCGAGAT CGTGCATACATATATTGGCGTCTCCTTTCAACTGATCCTGAGGTTTGATTTCTTGCATTTGAATCCAATCTCTTATATTTGGACTTTTGTCTACATGAGG TCAATTGGTTTATCTGCATAACCAACAGAAGATTGGATAAATATTGACTCTGTTGAGGATCGATTAATTTCTTTTTGTCATTCTGTGAAAATAGTAGCAC ACAATTAGGGTTGGCCTTTAAATCATTAATTGATAGTCTTCGTCTAACCACATGCAAAAAGTAGGTGTTTTCTCAGTTCCTCCTGAAAATTTCCATGGAT AAGGATAACCAGTATTGCTGTACATGCAATGTATCTATTTTGTTTTGCTCAGGCAGCTAAGGATGTTGTGTTAGCTGAGAAGCCTGTTATAACTGATGAC TCAAATCAACTTGAACCTTCTCTACTGGATGAGCTTCTTGCCAACATTGCTACATTATCTTCTGTTTATCACAAGCCCCCAGAAGCTTTTGTAACTCGTG TACTCTCTTCAGCTCAGAGAACTGAAGAAGATGATCCCGAGGGAAGTGAAACTGGGTATTCTGAGTCATCTGCAAATCCCGCAAATGGTGTCACATCACC ACCTGCTGCCAGACAATCAACACCTGCATCTGCAACATCTGCACCCACTACACCTCCATCTGCTGCACTCGTGCCAGATTTACTTGGTGATTTGATAGGC ATGGACAGTAATTCGATTGTTCCTCTTGATCAGCCAGCTACTCCTACTGGACCTCCATTGCCTATTGTAGTACCTGCTTCAACTGGTCAGGGTTTACAAA TCAGTGCACAACTGATTAGACAGGATGGTCAAGTATTTTACAGTTTGTTGTTTGAGAACACCACTCAGGTTCCACTTGATGGCTTCATGATTCAATTCAA CAAGAACACATTCGGTCTTGCAGCTGCTGGACCCCTGCAGGTTGCACAAATACAACCTGGAACATCAGCGAGGACACTCCTTCCTATGGTAATGTTCCAG AATATGTCCCAAGGTCCTCCTAGCTCACTTTTACAGGTTGCTGTGAAAAACAATCAACAGCCCGTGCAGTATTTCAATGATAAATTCTCATTGCATGTAT TTTTTAGTGAGGATGGTAGAATGGAACGTTCCAGTTTCTTAGAGACATGGAGGTCTCTTCCAGATTCAAATGAGGTTTCCAAGGACTTCCCAACTATCGT GCTTAGCAGTGCCGAAGCAACACTGGACCGGCTCGCTGCATCAAACATGTTCTTTATTGCAAAGCGTAAGAATGCGAACCAGGATGTGTTTTATTTCTCA GCTAAACTCCCTCGGGGGATACCGTTCTTAATTGAACTTACCACTGCGATTGGGAACCCTGGTGTCAAATGTGCAATCAAGACTCCAAACCCTGAAATGT CTTCACTCTTCTTTGAAGCCGTTGAAACTCTTCTGGTGGGTTGAAATGATTTCTTTTTTTCTCGATTTTTGGTTATACATTGTTTTTGTTAGCATGTTTG ATAAATATTCTGGACTGGAGTATTGTATCATGTGAAATTTTTTCCCACTGTTTATCTATCATATGCCCTTGCCAGTTGGCAGCTGTATTTCATTTTCACT ATTGCCATTTTGAACTTTATTTTAAACCTGCAATTGTGCTTTTGGGAATGTCTTTTGTAGAGAGGTTTGATGGCCTGTAATATAATAGCTTTCTGATTGC ATTGCTCCTCTTACCATTTTATATCAACTTATTGATTATTCAA
• Tissue: pods
• Gene name: LI_gene_183129;
• Additional information: details;

Expression of Ll_transcript_459930

FPKM

• PAB: 3.4
• PNAB: 17.7
• PS1: 17.8
• PS2: 13.4
• PS3: 16.3
• PW1: 13
• PW2: 15.6
• PW3: 13.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_459930

• Blastp: Beta-adaptin-like protein C from Arabidopsis with 96.64% of identity
• Blastx: Beta-adaptin-like protein C from Arabidopsis with 96.64% of identity
• Eggnog: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins(COG5096)
• Kegg: Link to kegg annotations (AT4G23460)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019423358.1)
• Pfam: Adaptin N terminal region (PF01602.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;