| Id Trinity | TRINITY_DN51202_c1_g1_i13 |
|---|---|
| Name Transcript | Ll_transcript_519530 |
| Sequence | CGTGTAAACTTTATATAGCGTACCAAACACTGTTCATTGCTGAAACTCATTTCACTTCTCTCTCTCTGCAAAACTAAGAGAGAATAATGAGTGAAACTGA AAAAATGGAGCAAATTCAAAAGCTAATAGGAACAATTTCACAACCTCACCCTTCACGAATTCCCATTCTCAATCTATTCAACCTTTACTTGGGTAGACAT AGCCTCCAGAAACGTGATGATTTAATCAGGGAACCCCCGAACAAAGCCCAAAAACGTGTGCTTGCTCTTAACCGAGAGCTCCCTCCACCAAATGAGCAGT TTCTTCAAGATTTTATGCAACTCAAGAACCAGTTTCCCGACCAAGATCAGTTACGTTCCGTGACCGAGTCTATTCTCATATTTCTAGTCATGCAGTGTAG TAGTCATGGAATACGGGCAGAGTTTCTTCTTTATGCTATTCGAAGTTTGTGCAGTGCTGAGTACATTAACTGGGAGACTTTCTTGCCATCTCTCCTTTCT TCAGTTTCTTCGGCAGAGTTTCCTGTTGATCAAGGGAATCAGTTGATGCCAACTGTTTATTCTAATTTTCAGCCTTCAAATTCTGCTTCTCAATTACCTT CAGTTCATCCTATGGGCTACCCTGCACGATCAACTAGTGAACCATTATCTTCTGCAGCTTTATCTCCAGTCAAATCACCTGATACTTCCTGCACTGGACA ACATTCTCAATTGAAAGTGCCATCTATTAGAAATAATGACATCAGCAGCCTTCGTCAGCTATGTTGCAAGATTATTTTAATCGGGCTGGAGTTTGATCTA AAACCCATGGTTTATTCTGCAATATTGAACCATATGCTGAATTGGTTGGTGAACTGGGACCAGAGGCAACAGGGAATTAACGAGCCCGATGCACCAAAAT CATTTAGACCTGACAAAGCCATAATAGGTTGGATGCACAGTTGTTTGGATGTGATCTGGCTTTTAGTCGACGGGGGAAAATGCCGAGTGCCCTTTTATGA ATTATTACATAGCGATTTGCAATTCATGGACAATATTCCTAATGATGAAGCAATATTTACACTTATCTTGGAGATCCACAGGAGACGAGATATGATGGCC ATGAACATGCAAATGTTAGATCAGCATCTTCATTGCCCTACATTTGGGACGCATCGGATCTTGACTCAAGCAATGCCAAATGTTTCAGCAGAAGCAGTAG CACATCTGCGGCTAACGCCAATCACATATTTAAGTGTACTTGGAGAACCACTGAATGGAGAGGATATTGCATCTTCTATCCAGAAGGGAAGTTTGGATTG GGAGAGAGCTTTACGCTGTATAAGGCATGCTATCCGCACTACACCGTCACCTGATTGGTGGAGACGTGTGCTGTTACTAGCTCCTTGCTACAGGCCTTCA TCTCAAGGGCTTTCCCCTGGTGCTGTTTTTTCTTCAGAAATGATCTGTGAGGCAACTATTGATCGAGTTGTTGAACTGTTGATACTGACAAATTCAGAGA TAAATTGCTGGCAGGACTGGCTTGTCTTCTCTGATATATTCTTCTTTCTTATAAAAAATGGGTGCATTGATTTTGTTGATTTTGTGGATAAGCTGGTGTC ACGTCTTACACAGGGTGATCAACATATTCTTAAGACCAATCATGTGACTTGGCTGTTTGCACAGATAATGCGAGTCGAGCTGGTTATGAACGCTTTGAAT TCAGATGCTAGAAAGATGGAGACAACCAGAAAGATTTTATCATTTCATAGAGAAGAGAGAAATTCTGATTCTACTAGCCCTCAAAGCATCTTGCTCGATT TTGTAAGCAGCTGTCAATCTTTATGTATTTGGTCTTTGAATTCATCAACCAGAGAATTTGTGAACAATGAGCTGCGGCAGAAAGGAAAACTAATAGATGA ATGGTGGAAACAAGTCAGCAAAGGGGATCGCATGATGGATTATATGAATATGGATAAACGCTCATTAGGGATGTTTTGGGTTTTGTCGTACACAATGACA CAACCTGCTTGCGAAACAATATTGAAATGGTTAACTTCTGCTGGAGTTATCGACTTATTACCGGGAACAAACCTTCAGCCAACTGAGAGATTAGTGGCTA CACGAGAAGTGAGCCCATTGCCCATGTCATTGTTATCTGGAATGTCGATGGGCTCATGTATGAAACTGTCTTTACAACTGGAAGAATCTCTGTTTTCGGG GCAGGTTGTACCCAGCATAGCAATGGTTGAAACATATAGTAGAGTGTTGCTCATTTCACCCCATTCTCTATTTCGTTCACATTTCAGTCATTTAGCACAA AAGAATCCTTCTTTGTTGAGCAAGCCTGGAGTAAGACTTTTGGTGCTTGAGATATTGAACTACCGATTACTTCCGCTTTACAGGTATGAGGGAAAAACCA AATCCTTGATGTATGATGTTACAAAGATTATTTCTGCTCTAAAAGGAAAAAGAGGAGATCATCGAGTATTCAGATTAGCTGAAAATCTGTGTCTGAATCT CATTTTCTCATTGAGAGATTTCTTCATGATTAAAAGGGAAGGGAAGGGACCAACTGAGTTTACAGAAACCTTGAATCGAGTAACTGTTATAACACTTGCT ATCCTTATTAAAACATGTGGGATTGCAAATGTTGAACACATGCTTTATCTCCGAACTATGTTAGAACAAATATTGTCAACCAGCACACATACATGGTCAG AAAAAACACTACGCTACTTTCCTTCAGTTCTGCGTGAAGCGTTGGGCGGTCTTCTAATAGATAAAAGAAGCCTTGCAATACAAGCATGGCAGCAGTTATA AACCAGAAAGGTGTGCCTAATCAGTGCCTTAACCAGTAAGAGGCACCTACCCCATTTACAACATGCTTTTAACTGAGCCAAAGGTGTACTTATGTTTGTG GTGATGTTAGTCATTACATAAATGTCATGGTTAAAGGCAAAGCTGAAGTACATAAGGAATCAGTGTGTGAAAGAAGTGATTGGTTTGAAGCAGTGAGGAT TTGAAGAATATGTATTAATCTTTCTCACGGCGAAAAACAAATGAATGGTGCTGCTCCAAGCTTGAAGTCTAAATGGATTTTACATGGCAGAGCATCTTAG AGATATTAACCCTTATGGGCTGACACCTAGGAGCTTAACTTACTAGGAGAGTGGTTTCTGGACATAGACCATTGCATTAATATATACATTTAGATTTGAA TGTCTATTGTGTACAAACTTTACTGAATTAAGCATGGCATGGACTGCACTATTATCACATACATTTTAACTTTAGAGCTACATGGTTACAACTGTTTCTA CTTTGTATATATGAGATAATTAGATAAAGTTTGTATGCAATGGCAATAACTGGATAGCAATGTTTAAGTTCTATCAAACTATGTTAGAGGGACAAGATGT AGTAAATACATTAATAAAAATTTGTTATTTTTATGTGCTAACTTTTTCTAAGCATTTAAATTAATTCTGAAGAGATTTGTGCAGGCAGAAACCATTGTTT TACACCAGTGCACTCAGATTCTTTCATCATCAGCTGATGCTAGTTATGTGACAACCTATATTGGTCATAGTTTCCCTCAGCATCGACAATATTTGTGCGC TGGTGCATGGATATTAATGCATGGCCATGCTGAAACGATTAACGGTGGAAACCTGGGGCGTGTGCTGGGGGAATTTTCTCCTGAAGAGGTGACATCTAAC ATTTATACAATGGTGGATGTTTTGCTTCATCATATGCAAATGCAGCTCCAACAAGGACATGCCTTACAGGACCTTCTATTGAAAGCTTGTGCAAGCCTTG GCTTTTTTGTTTGGACGAATGAGCTACTTCCTTTGGATATCTTGCTTCTAGCACTTATTGATCGTGATGACGATCCGCATGCCTTGCGTATTGTGATTAC TCTTCTTGATAGGCAAGAGCTTCAGCAAAGAGTAAAACACTTTTGTATGACACGTGGGCACCATGAACATTGGCTTTATTCTGGCATATTCAAGCGCGTT GATCCATCAAAGGCTCTTGGAAATTACCTCTCATGGAAGGATAGGTATCCAGTGTTCTTTGATGATATTGCAGCACGCTTGCTTCCGGTCATCCCCTTAA TTATTTATAGACTTATTGAAAATGATGCTATGGAGCCAGCAGACAGAATACTGGCCTTGTATTCTTCACTTCTTGCTTATTACCCTCTAAGATTTTCCTT TGTTCGTGATATACTTTCATACTTCTATGGTCATCTTCCTGGAAAGCTGATTGTTCGAATACTCCAAGTACTTGATATCAATAAGATTCCCTTCTCAGTG TCGTTCCCACAGCAAATAAGTTCATCAAATCCCGTCACATGCCCTCCTCTGGATTATTTTGCGACATTATTATTGGGAATAGTGAATAATGTTATTCCTC CATTACATGATTCAAAATCTGGATCAGTGGAAGGTGCTTCAAACAATGCACTGCGTACTCCACCTAACAAGCCTCCAGCTGTATCTCAGCCCGAATCAGA AAATGCTCCTGAGGGCAAGAAGGCGTTCTACCAAATTCAGGATCCCGGAACATATACTCAGCTAGTTCTTGAGACTGCGGTCGTCGAAATACTTTCCCTT CCTGTATCTGCCTCTCAGATAGTACATTCACTTGTTCAAATTATTCTTAATATACAACCAATGCTGATCCAGTCCAGCAATGGTATCCATGGTGGTTTAA ATGGTGCCGGACAAGGTTCAGTATTTTCGACATCGCCCTCCGGAGGAAGCTCAGATTCCTTGGGTGCAAGCAGATCAACTCCTTCAGTTTCCGGAATAAA TACCTCTAACTTTGCTTCACAAAGTGGTTATACATGCCAACAATTGTCTTGCTTGTTGATTCAAGCTTGTGGACTCCTGCTGTCTCAGCTTCCTTCTGAT TTTCACTTTCAATTTTACTTGGAGACGGCACGAATTATAAAAGAGAACTGGTGGATTGCAGATGGGAAAAGGTCACTTGGAGAAATAGACTCTGCTGTTG GCTATGCTTTGTTAGATCCAACTTCGGCTGCAGAGAACAATACCTCAACACCAATTGGGAATGTGGTTGCCTTGCTTCATTCTTTCTTCAGTAACCTCCC ACTAGAATGGTTAGAAAGGACCCATGTTGTCATCAAGCAACTTCAGCCAGTAACATCAGTCGCAATGTTGAGAATAGCATTCCGTATAATGGGTCCACTC CTTCCAAAACTTCTGGGTGCTCATGCACTTTTCAACAAGACCCTTTCATTACTATTAAGTACACTAGTGGATGTATTTGGAACAAACTCTCAGCATTCAA CTGCTGTTGAAGCATCAGAAATAACTGATCTCATTGACTTCATCCATCATGTCGTCCATTACGAAGGGCAGGGAGGTCCTGTGCAAGCTAGCAGCAAACC TCGACCGGAAGTTTTGGCTCTTATCGAAAGCTCATCTGAGAATCTACGTCCAGACATTCGGCATCTGATGCTACACCTGAAGACTGATGTAAATTCTTCT ATTTACGCGGCTATGTCTCATCCAAAGTAAGTGCCAGATTATAGTCCGAGCCTATGAAGCACAGACACTTCAAATGAACATGTATCCATATCCGACATCG CATGAATACTTTTGGTAGCTCCTAATTGTATTTGTTAATTTTTTAAATTTTTATACCATCATAGACAAAAATATCAAAATAAGTAGATAACTATTAGCAT TTTATTATATTCCAAATTATTTACACTATTAAAACATTATTCCTCACTTCTAGTGTAAGATTTGTGCTTTTATCCTAACTTTATATTAATTTCATATCTT GTATCATAATTATATCGTGTACAATAATTTTAAAATATTCCATGTACTTGTGTATCGTGTCTTATACTATCTTTGTCATGTGTTGTATTATTTGTATAAT CACTTTGTATTGTATTATATTCATGAAGTAAGCATCTTCATATTGTTATTGTATTCCAAACTCTAAAAGTCATCAATAACTCTTGTGCATGGGCGCTTTA TTTAATTGTAAATTAGTCTAAACTTTCTATTGAGTAGTGAGTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_183156; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_519530
| Blastp | Mediator of RNA polymerase II transcription subunit 23 from Arabidopsis with 64.96% of identity |
|---|---|
| Blastx | Mediator of RNA polymerase II transcription subunit 23 from Arabidopsis with 63.66% of identity |
| Eggnog | Mediator complex subunit 23(ENOG410ZH5R) |
| Kegg | Link to kegg annotations (AT1G23230) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019424087.1) |
| Pfam | Mediator complex subunit 23 (PF11573.7) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |