| Id Trinity | TRINITY_DN51211_c1_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_517210 |
| Sequence | AGTTGGGCAAGTTTGAAAGCTTTGAAGCTGACCTTAACACACATTCACAGATTCACTGTCCATCACTCTTCTCTTCTTTCCACTCACCTTTCCTATTCCC CTCTTCAATTCATTGCCCCACTTTCTTTTCTCTTTCTTTTAACCCAACAACAAAATTTACTCACCAACATTAACTTCCAATTTTTCACAATTTCTTTCAT TTTATTTATTTATTATCATCCTCATTGATTTTCAAATTCTAATTCATTTATTGTGAAGGGATTTAAGCCACATCTCAAAATTCTTTCCCCAATAATTGAT ATTGGGTCACAAACACACACTTATTGCATATCCCTATAGTTGTTGATACTTGATTTAGTTTAACCACACAAATAGAAATACCACTTCACTGTTTCTATAT CAAGAACTAGTTTTATGATAATTTTGGTATCTGGGTTTTATCCAAGTTTAGATTTTTCGTAATGGGTTGTATTTACTCTAAAGTTTGCATAGGTGATACA TGTAGAGATTCCAGCATCAATGGTGATGCTATTACAAGACCTGTTGTGCTTTCTGAAACATCTTCTGATGTTCAAGAAGGTGAATTCAGAGACCAATTGA ACCAATTGAGCTTAAGCAGAGACCCTGAAGCTGGAATTAGAAGGCTAGCTAGGGTTTCAGCACAATTTCTTCCACCAGATGGGTCGCGTATTGTGAAGAT ACCTTCAAATAGCTATGAATTGAGGTATTCGTATTTGTCGCAGCGAGGTTATTATCCGGATGCTCTGGATAAGGCTAACCAGGATAGTTTCTGCATCCAC ACGCCGTTTGGGACGAGTCCTGATGACCATTTCTTTGGAGTTTTTGATGGGCATGGCGAATTTGGAGCGCAGTGTTCACAGTTCGTGAAGACTAGGTTGT GTGAGAATTTACTCAGGAATAGTAAGTTTCATGTTGATGCTGTAGAGGCTTGCCATGCGGCATTCTTGGCTACTAATTCGCAATTGCATGCTGATATTTT GGATGATAGCATGAGTGGCACGACTGGGATCACGGTGTTAGTACGGGGTAGGACAATATATGTGGCGAATTCTGGTGATTCGAGGGCAGTGATTGGAGAG AGGAGAGGGAAGGAATTAGTGGCGGTTGATTTGTCGATTGATCAGACACCTTTTAGGCCCGATGAGCTTGAGAGGGTGAAGCTCTGTGGAGCCAGGGTTC TTACTTTGGATCAGATTGAAGGGCTTAAGAACCCTGATGTTCAGTGTTGGGGCACCGAAGAAGCTGATGATGGTGACCCTCCTAGGCTGTGGGTGCCCAA CGGGATGTACCCGGGTACAGCTTTTACAAGGAGCCTAGGCGACTCTGTTGCCGAGTCTATTGGTGTTGTTGCTAACCCTGAGATTATTGCCTTTGAACTC ACAAAAGATCACCCTTTCTTTGTGGTTGCCAGTGATGGGGTGTTTGAGTTTCTGTCTAGCCAAACTGTTGTTGAAATGGTTGCAAAATTCAAAGATCCTC GTGATGCTTGTGCTGCAATAGTTGCTGAATCTTATCGACTCTGGCTACAGTATGAAACTCGTACAGATGATATTACAGTAATTATTGTGCATATCAATGG GCTAACTGAACCTTCTGTTGGTCAGTCAGCAAGTTATGATGTTTTACAAACCCGAGTGCCTCAAGTTGTAGAGATGACAGGTTCAGAATCTCCTTCCACC TTTGGCTGGAACTATAGGAACCAACATGTAAGGCGTGACTTGTCAAGGGCACGCCTCCGAGCAATTGAAAATTCCCTAGAGAACGGGCAAGCTTGGGTTC CTCCATCTTCAGCCCACAGGAAGACATGGGAAGAAGAAGCACACATAGAGCAGGTGTTACATGATCATTTTCTCTTCCGAAAACTTACCGATTCCCAATG TCATGTTTTGTTGGATTGTATGCAAAGAGTTGAGGTTGAATCTGGAGATATTATAGTACATAAGGGTGGTGAAGGTGACTCTTTTTATGTTGTTGGCAGT GGAGAGTTTGAGGTCCTGGCAACTCAGGAAGAAAAAGATGGGGAGGTACCTAGGGTTTTGCAGCGCTATACAGCTGAAAAACTATCTTGCTTTGGAGAAC TTGCTTTAATGTACAATAAACCACTCCAGGCCTCTGTACGTGCTGTAACAAAAGGAAATCTGTGGGCATTAAAGCGAGAAGATTTTCGAGGGATTTTAAT GTCAGAGTTCTCTAATTTATCATCGCTGAAGTTGCTTCGTTCTGTAGATCTCCTCTCTAGGCTAACAATTTTGCAACTGAGTCAGATCTCAGACTCCCTT TCTGAAGTTTCCTTCTCAAGTGGGCAGACAATAATTGATAAAGATGACGCCCTTGCATTGTATATTATCCAAAAAGGACAAGTGAAAGTCACTTTTGGTG CTAATATATTGACAAGTATAAACGCCTGCAGCCTCAAGGCTGACATCCAAAATGAGGATGATGAAGAACTGGGTGGAAGAGAATTATCAATCGAGAAGCC TGAGGGAAGTTATTTCGGTGAATGGGCCCTTGTTGGTGAACATATTGGTTCCTTAAGTGCTGTAGCTGTTGGTGATGTTGTATGTGTTGTACTAACAAAG GAGAAATTTGAATCCGTCGTTGGCTCCATGCAAAAGCTTTCACATGAAGATCTCAAGTTTAGGGATAATTCCAAGAAGTTGACTGGAAACTTTGACTTTT CATCCCTTGATAAAGTCCAGCTCTCAGATTTGGAGTGGAGAAAGACCCTATATTCCACTGATTGCTCTGAGATTGGGATTGCAAATTTAAGAAACTCAGA AAATTTGCTGACATTGAAGAGATTTTCTAAGCCAAAAGTGAAAATGCTAGGAAAGGAAACACAAGTCCTGAAAGAGAAAGACTTGATTACGGGTATGAGC TCTTCAGCTTGTATACCACAGGTTTTACGCACTTTTGCCGACCACATATATGCTGGAATACTGCTAAATACATGTCTTGCTTGCCCTTTGTCTTCCATAC TTTCAAGTCCTTTTGGTGAATCAGCAGCAAAATTCTGTGCTGCTGCTGTTGTTACTGCTTTGGAAGACTTGCACAAGAATGGTGTTCTCTATAGAGGTCT GTCACCTGATGCTTTGATGTTAAACGAAATGGGACAAATACAGCTGGTGGACTTCAGATTTGGTAAGAGGCTGAGTGATGAGAGAACATTCACAATTTGT GGGATGGCAGATACGCTAGCACCAGAGATTGTTTTGGGAAAAGGACACAGTTTCCCGGCTGACTGGTATAAATAAAACTTGTATGAAACCACTGAGTCTC TGTAAACCACACAATCCCTCATGTCAGATGTGCACTTATTTCCCTTCCTCAAAAACATCAAAAATAACCTATAATAAATATGTTATACCTGATAGCCATT AGATTAAGTCTTATAATAACTTTAGGCCTGAGGAAGAGCTTATTTGGGCTTATGAAAATGTCTTATTAAAATAGCTTTTGATGTTCCTATGAGCCCTTAA GCTTATTTCAATAAGTTTATCCGAGAAGCTTGTATGAAACTAAGCTCACTTTAGATTATTTAAAAAAAAATTATTGAATAAGCATGTAATTAAGTTGTTT ACCTACGCGAACCCTTAGTCACTTCAGTATTACCCTAGTGTGTTTTTTGTTCCCCTACTTTAATTTTAACAATGCTGATCCAGTAATTTTCTAATCAATG TAATTCAACCCCTCTGTTTAATTGTCATTGATGTAACCACTCTTTTTTTGCTGATGTGTCATATTCCATTTCCATGTCATCTCCACATTATTTAAATAAA AATCAAATACGTATCATGTCACCGAATTGGAGGATGTGGTATTTAACACACTCTGTCCAGAGGCTTTGGTTAAACTCTGAATTTCGAGAATGTAAATCAT TTATAGTTATGATATGCTTTGGATAAGCTCTGAATCTTTAGAATGTAAATCATTTATTGTTATGATCCTATGTTTTCTTGATTGTGGTTTGTGGATGTCA GCGTGACAAACTTCGTTGACGATTATGCAGGTGGTCATTGGGAGTTTTAATA BLAST |
| Tissue | pods |
| Gene name | LI_gene_183222; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_517210
| Blastp | Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein from Arabidopsis with 69.44% of identity |
|---|---|
| Blastx | Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein from Arabidopsis with 69.44% of identity |
| Eggnog | transcriptional regulator, crp fnr family(COG0664) |
| Kegg | Link to kegg annotations (AT2G20050) |
| CantataDB | Link to cantataDB annotations (CNT0001152) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448372.1) |
| Pfam | Protein phosphatase 2C (PF00481.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |