Ll_transcript_517772

• Id Trinity: TRINITY_DN51214_c1_g2_i6
• Name Transcript: Ll_transcript_517772
• Sequence: CCAAAATCTTCCATCACATTTTTCTCTCATTCTTGTTCCTCTTCAATATCGAGCAATAACACCATTCATTCACTCACCCAATCTCTCTATTTCTCTCTCA GCATCAATGCCTGGCCAAAAACGCTCTTTCTCTGACTCTCTCAACGATGGAGACACTTCTTCACAGTTCCCCCACCATGTCAAACAGCAACAACAACACC AGCAACAACCTAAGCAGCACGAAGATGAAGACGAGGGAAACGTTGAGCACGAGGAAGAAGAAGAGCAAGAAGGTGATGCAAAAGAAGAACAAAATGATGA AGATGAAGAAACAGGTCAACACCAGAACAATAACAACGATGAAAAACCACAGGATTCTGACGAAACTACATCTTCTGGCCCTGAAGATAAATCGGAGTTT GTGTATGTAGAACTTCATGAAGTTCGTAAAGATGTCCAGTGTCCAATTTGCCTTGGCATTATCAAGAAAACAAGAACGGTTATGGAATGCTTGCACCGGT TTTGCAGGGAATGCATTGACAAGTCAATGCGATTAGGGAACAATGAATGTCCTGCTTGCCGTACACATTGTGCCAGTCGTCGTTCTTTGAGAGATGATCC AAACTACGATGCACTTATTGCTGCTTTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAG ATTCAAGCTTCAATTGCAAAAGTAGTTCAACGACAGTCTGAAGCACTGGGAAAGAAACGTAAAGATACACCAGGTGCATCTGTGACAAGATCACAGCGTA ATCAACGAAATGTTCATTCTAGGAGACAGAACCAAGTGATTGATAATCAAGGGTCTGAAGATAATGAAGAGGAAAATGACAATAATGAAAAGGACTCATC TTCTGCCGATGAGCGGTGTACAGAACCCAGGCAGAGAAAGCGAAAGAGATGGACCAGAGTTCGCCCCTCTCAGCCCTCATCATCAAGGGCAAGTCCTGAT GGTGGAAGCATAGAAAGTGATATGGATATAAGTAGAGAAAACCAAGGAACTTCAAGGCAGGTAACAAGACCTCGAAAGCTTACTTGGGGAGGGGGTGGTT TTAGAAGTCACACACGGCATGGCAGTGGTGGTGGTAGCAATAGCAAAATTTCTCGCAATGGTCGATTGTCGAAGTTGGTTGATCATCTCCGCAACTTGGA CGAAAGCGCTGATGAGTTCGAAATCCATCTCATGCTTGTTTCTGTGGATAAACAAAGTACACCAATTTTGCAGCAGCCACACCTTTGCTGTCGACCAACT ACATCTGTCAAGCACCTTTGTGAATATGTTGCTTGTCAAACGCCATTGGCAGTTGAGGAAGTTGAGATATTGGCAGTTAAAGGATGCAGCAGTGCAAAGT CTGACAAGTCAGTTGATGACACTTCAGCCTTGATATGTGATAAACTAACGACAATGGTTATTGATCCATGCAAAGATGAACTGGAAATTCTGAAAGAACA TGAATCCTTGGCTGGGATTACATCCAAATGCATATCTAAGATGGAGCATTTGATTCTTGCATACAGGCGTAAGGAGGCGCTATAATCATGTTGGATGCTC ATACTTCTTTATGTACATAAAAGGAACCGTTGCGTGGAGTGGTCACTTCTCTAGTTGCATCCTCAAGACCATAAAATATATCTACAAAATACTAAATTAT GTGAACCTCTCTAAAGGTTATGCAAGCTTAGTGGTAAGCTTTAGATTCAATTTATATTATACTAGTTGCAGTTTCAGCTTTATTTGATTTTCAGTGTTGC TCAATTACCAAAGGATATTTTTTAGCATAGTTTCAAATCTATCATCGAGATTGCAGTAATTGTAGTAAACAGAGTGCTCTGCATATATAGCAGATTTCAT AATATTCATTGTTGTAAATGAATGTTTTAATGTAAAAGGGTATGCTTTTTTAAATAGACATTAATGAAGATATATTACAAACTGGTATGGCTCA
• Tissue: pods
• Gene name: LI_gene_183239;
• Additional information: details;

Expression of Ll_transcript_517772

FPKM

• PAB: 0
• PNAB: 0.4
• PS1: 0.5
• PS2: 1.3
• PS3: 1
• PW1: 0
• PW2: 0.7
• PW3: 0.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_517772

• Blastp: Putative E3 ubiquitin-protein ligase RING1a from Arabidopsis with 51.2% of identity
• Blastx: Putative E3 ubiquitin-protein ligase RING1a from Arabidopsis with 49.64% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (AT5G44280)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019432121.1)
• Pfam: Zinc finger, C3HC4 type (RING finger) (PF13923.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;