| Id Trinity | TRINITY_DN51214_c1_g2_i9 |
|---|---|
| Name Transcript | Ll_transcript_517778 |
| Sequence | CCAAAATCTTCCATCACATTTTTCTCTCATTCTTGTTCCTCTTCAATATCGAGCAATAACACCATTCATTCACTCACCCAATCTCTCTATTTCTCTCTCA GCATCAATGCCTGGCCAAAAACGCTCTTTCTCTGACTCTCTCAACGATGGAGACACTTCTTCACAGTTCCCCCACCATGTCAAACAGCAACAACAACACC AGCAACAACCTAAGCAGCACGAAGATGAAGACGAGGGAAACGTTGAGCACGAGGAAGAAGAAGAGCAAGAAGGTGATGCAAAAGAAGAACAAAATGATGA AGATGAAGAAACAGGTCAACACCAGAACAATAACAACGATGAAAAACCACAGGATTCTGACGAAACTACATCTTCTGGCCCTGAAGATAAATCGGAGTTT GTGTATGTAGAACTTCATGAAGTTCGTAAAGATGTCCAGTGTCCAATTTGCCTTGGTATCATCAAGAAAACAAGAACTGTCATGGAATGCTTGCACCGGT TTTGCAGGGAATGCATTGACAAGTCAATGCGATTAGGGAACAATGAATGTCCTGCTTGCCGCACACATTGTGCCAGCCGTCGTTCTTTGAGAGATGATCC GAACTACGATGCCCTTATTGCCGCTTTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAG ATTCAAGCTTCGATTGCAAAAGTAGTTCAACGACAATCTGAGGCAATGGGAAAGAGACGTAAAGATACACCAGGTACATCTGTGACAAGATCACAGCGCA ATCAGCGAAATATTCATTCTAGGAGACAGAATCAAGTGAATGATACTCAAGGTTCTGAAGATAATGACGAGGACAATGACAATAATGAAAAGGACTCATC TTCTGCCGATGAGCGTTGTACAGAATCTAGGCAGAGTAAGCGAAAGAGATGGACCAGAGTTCGCCCTTCTCAACCCTCATCATCGAGGGCAAGCCCTGAT GGTGGATGCATAGAAAGTGATATGGACATAAGTAGAGAAAATCAAGGAACTTCAAGGCAGATGACACGACCTCGAAAGCTTACGTGGGGAAGGGGTGGTT TTAGAAGTCACACACGGTATGGCAGTGGTGGTGGTAGCAATAGCAAAAGTTCCCGCAGCGGTCGAGTGTCTAAGTTGGTAGATCATCTCCGAAACTTGGA TGAGAACACTGACGAGTTTGAAATCCATCTAATGCTTATTTCTCTGGACAAACAAAGTACACCAATTTTGCAGCAGCCACACCTTTGCTGTCAACCAACT TTGTCTATCAAGCACCTTTGTGAATATGTTGCTTGTCAAACACCTTTGGCAGTTGAGGAAGTTGAGATATTGGCAGTTAAAGGATGCAGCAGTGCAAAGT CTGACAAGTCAGTTGATGACACTTCAGCCTTGATATGTGATAAACTAACGACAATGGTTATTGATCCATGCAAAGATGAACTGGAAATTCTGAAAGAACA TGAATCCTTGGCTGGGATTACATCCAAATGCATATCTAAGATGGAGCATTTGATTCTTGCATACAGGCGTAAGGAGGCGCTATAATCATGTTGGATGCTC ATACTTCTTTATGTACATAAAAGGAACCGTTGCGTGGAGTGGTCACTTCTCTAGTTGCATCCTCAAGACCATAAAATATATCTACAAAATACTAAATTAT GTGAACCTCTCTAAAGGTTATGCAAGCTTAGTGGTAAGCTTTAGATTCAATTTATATTATACTAGTTGCAGTTTCAGCTTTATTTGATTTTCAGTGTTGC TCAATTACCAAAGGATATTTTTTAGCATAGTTTCAAATCTATCATCGAGATTGCAGTAATTGTAGTAAACAGAGTGCTCTGCATATATAGCAGATTTCAT AATATTCATTGTTGTAAATGAATGTTTTAATGTAAAAGGGTATGCTTTTTTAAATAGACATTAATGAAGATATATTACAAACTGGTATGGCTCA BLAST |
| Tissue | pods |
| Gene name | LI_gene_183239; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_517778
| Blastp | Putative E3 ubiquitin-protein ligase RING1a from Arabidopsis with 50.96% of identity |
|---|---|
| Blastx | Putative E3 ubiquitin-protein ligase RING1a from Arabidopsis with 49.16% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (AT5G44280) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019432180.1) |
| Pfam | Zinc finger, C3HC4 type (RING finger) (PF13923.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |