| Id Trinity | TRINITY_DN51215_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_519480 |
| Sequence | ATCGGTATTTCACCTTTTCTTTCTCCCCAATCTAATATTTTGTTATTTACGGAAATAATATTTTTTATTTTTATAAAAAAAAATGATTTTTTTTCCTGGT TAGGTTTACAAACATGAAGCTTGATACCAGTGGTCTTGAATCATTCTCCTCACAAATTGGACTTCAAAACGACATCGTTGGAAAAATTTCGGATGCAACA TCATTCGATCTTCCCAATTCAAGCGATTTTGATGGGTTTGTGAAAGAAGCTATTCAAATGGTGAAGCCTGCAAAGGGTACTACAACTCTGGCTTTTATAT TTAAGGATGGTGTTATGGTAGCTGCTGATTCTCGTGCTAGTATGGGTGGATATATATCATCTCAGTCCGTGAAGAAAATTATTGAAATCAATCCATATAT GCTTGGGACGATGGCCGGAGGAGCTGCTGATTGCCAATTTTGGCATAGGAATCTTGGGATTAAGGTGATGCATGTTATTTTTCGAAATTGAATAATATCA CTTTTTTGTCTGTATTATTATTCTCTTTTGCTTGGTGTATTTTACTCTTATATTATTGTATGCACATTAGTGTGGATGCTTTTCGTGAGAAAACATATAG ACTAGTAAATACTCTAATGCTGAGAATGTTACTGTATAACCATAATGGTTTTGAAGGATGCTTTTTCAAATTTGTCAGGTTTCCTGTAGACATCAAACTA CTTATAATAACTCAATTCAGATTAACCATCTTATTGATTTTGTTCCGTCAAATTTGATGGGTTTATCTTCTAGATAAAATCTACGTCACTTCAAATTCTA GAAGCTTTACAGAATGATCTTTATAGTGTGAAAGAAACATTTTAACTCACCCAAAATGGCTATGTTTGCATTGGGGAATCGGTGCATTTATGATATCCAT GTGCATCAATAAATGTGTGTTCACCGATTCGTAACATAAACTTGTCCATTTTGGCTGTTAAAATGTGCCCTTGGACACACATCAGAAAAATCCTTAAATT ATTATTGTCTGCGGTTGTGGGCCTAATGGGGACATGCTAATGGCCTTGGATGCCTATCAAAACTGTAGCAGGCTAGTATTCTTGCCAACAGAAAATCATC ATTGTTTCGTTGTGTTACTTTATGGGTCCTTTACGCTGTTTTTACCTTCATAGTTCATTTACATCACCTTTTGTTCATCGTCTTCCATTTACATTTTGGA ATCGTAATACCTATGTTGATGCATGTTTCATATCAACATTCATATATACGGAACTCTTGACCAATTTTCTGATTTACTAAACTTTTCTATATGCCTAAAT TCATATGGTTTTCACACCCTTCAATTTTCTAGTTAGTAAAGCTAAATGTCTTAATTCACTTGAACTAAAATGAATATACTTTACAAGCTGCACAAATTTT CTCATTTAATCTTATAAACTTTATCTTTTGCTTTCCAATATGATTCATTCCTTTTATATATGCGGTCAGAAATTGTTTATCTGATTCAGTTATACTCTCT TTAGTGTCGGTTGCATGAGTTAGCAAACAAACGAAGAATTTCAGTAACAGGAGCCTCAAAGCTACTTGCAAATATTTTATACTCTTATCGTGGAATGGGA TTATCTGTTGGTACCATGATTGCTGGATGGGATGAGACGGGTCCTGGTCTGTATTATGTTGATAGTGAAGGAGGAAGACTGAAAGGTACTCGGTTCTCTG TTGGATCGGGTTCACCATATGCTTATGGTGTATTGGACAGCGGATACAAGTATGACATGTCAATTGAGGAAGCTTCTGAACTGGCTCGACGAGCAATTTA TCATGCAACATTTCGTGACGGAGCTAGTGGTGGAGTTGCTAGTGGTACTTTTTCTTTCTTCCATATAGACCAATTGCAAGCTGCATCTTCATATGGACTT TATATCTATGCTTCTAGTCTGACATTTCATTTCTCCCCCTCCCACCAACAGAAAAAAATGTCCCACATAGTAGCTTATTCATCATGTCTTGTGTGGATAA CACATGCATTCGTGTTTGAGCACAATTATCCATGCACTTGCCCGAGACGTCTTTCTGTCTGTTTTCAAACAAATCCTTTAAAATATAGTCTTTACTTTCT AACTGGATAGGATGAAATGGTTGAAAAGATGTTGCATCAGTTTGTACAGGTGCATCATTGTAGTTATCATTATGTCAGCATTTTCCACCCACTATTTTGG ACACATAGTGCATAGTATATAGTTATAGCCATTTATTAACTATTGTCTCACTAATCTGTGAATCTATATGATTGTAGTGTACTATGTTGGACCAAATGGA TGGAAGAAATTGTCTGGTGATGATGTTGGTGAACTCCATTACCATTACTACCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_183242; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_519480
| Blastp | Proteasome subunit beta type-5-B from Arabidopsis with 77.5% of identity |
|---|---|
| Blastx | Proteasome subunit beta type-5-A from Arabidopsis with 94.69% of identity |
| Eggnog | The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity)(ENOG410XQRP) |
| Kegg | Link to kegg annotations (AT3G26340) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (NP_001265983.1) |
| Pfam | Proteasome subunit (PF00227.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |