Ll_transcript_517277

• Id Trinity: TRINITY_DN51240_c2_g1_i1
• Name Transcript: Ll_transcript_517277
• Sequence: TGCACCTCGATGCCGGAGTAGTCCCAAAAGGATTTGGAGGCCCTTGCGTGCTTCCATCAACAACACCGTTGGAGCCACTAGTCTTGTTACTCTTGAAAGA CTCAACTTATTTCTTTAGGGTCCCATGTTTCCCTTATTCTCTCATGAGCCACATTTCTTTTCCCATTGGATTCTATATATAAAACCAGCTGCACCATCAC AAACCATGCTCATCATCATTATCATAAAGTAGTTTATTATAAAGTTTAAGCAGCTCATAAAATTTAGCAGCAAAGTAAGTTAAGTTAATGGGTAGAAGCA AGTTTGAGGCATGGAAATGCATGAACAAGTTTCACTGCTGTGGGAACCTGTCACCACAACCACACTACCCTTCAATCACAAGGTACCCAAAGAAGGAGGA GGTAGTGGTGGTGGTGGAATCAGGATCAGAATCAAAAGCTGTTTTTAGTGTTATTGGAATGACTTGTGGTGCTTGTGCTGGATCTGTTGAGAAAGCTATA AAGAGCTTACAAGGGATTAGAGAGGCCTTTGTTGATGTTTTGAATGATAAAGCTTTGGTTCTTTACCACCCTTCTATGGTTAACAAGGAGAGAATATGTG AAGCCATTGAAGATGCTGGATTTCAAGCCAAGTCCATTGATGAAGAAACCAATGACACCTCTTCACAAATATGTAGAATACACATTAAGGGCATGACATG TACTTCTTGCTCCTCCACCATTGAATCAGCTCTACAAACCATGCATGGGGTGAAGAAAGCAAGGGTGGCCTTAGCAACTGAAGAAGCAGAAATCTGTTAT GACCCTAACATTGTGAGCCACAACCAGCTAATGGAAACTATAGGAGATGTTGGGTTTGAAGCCATATTAATAAGCACAGGGGAACACATAAGCAAGATAG AGTTTAAGATTGATGGCATTCTAAATGAGGAATCAATCAGTGCTATTGAACATTCTCTGAAGCCACTACCAGGTGTTGAAACTATAGACATATATCCACA CATTAATAAAATTACCATAACTTATAAACCATATATGACAGGACCTAGAACCTTTATACAAGTTATAGAATCTACTGGATCAGGTTGTTTTAGAGCAGTG ATATTTCCAAGTGAAGGAGGAAGAGAAACACATAGACAAGAGGAAATTAAAAGATACTTCAAATTCTTCATATGGAGTTTGGCTTTAACAATTCCTGTTT TTTTAACATCCATGGTACTTATGTATATACCTGGAGTTAAACATGTTCTAGACATGAAAGTTGTTAATATGCTGAACATTGGATTGCTCTTGAGGTGGGA GTTTTCTACTCCAGTGCAGTTTATAATAGGCATGAGATTCTACATTGGTTCATATAAAGCATTGAGAAAAGGTTCTGCTAATATGGATGTGTTGATTGCA TTAGGAACCAATGCAGCATATTTCTATTCTGTCTATGTTGTAGCAAGAGCAGCTTTCTCTAAAGACTTTGAAGGCAGTGATTTTTTTGAGACTAGTGCTA TGCTTATCTCATTTATCCTACTTGGCAAGTATTTGGAAGTGTTGGCAAAAGGGAAAACATCTCAAGCAATTGCAAAGCTTATGGATTTGACACCTGACAC TGCAACCCTTCTAACTCAAGATGATGAAGGAAATGTGATTAGTGAACAACAAATTGATAGCAGGTTGATACAAAAGAATGATGTGATCAAAATTGTGCCC GGCGCAAAAGTAGCATCAGATGGTGTTGTCATATGGGGAAAAAGCCATATAAATGAGAGCATGATAACTGGAGAGGCTAGGCCTGTGGCTAAGAGGAAGG GTGATATGGTGATTGGAGGCACTGTGAATGAGAATGGGGTTTTGCATGTCAAGGTAACAAGAGTTGGATCAGAGAGTGCACTCTCCCAAATTGTTAGGCT TGTTGAGTCTGCCCAAATGGCTAAGGCACCAGTGCAGAAACTTGCAGACCATATTTCTAAATATTTTGTTCCTTTGGTCATTTTGCTTTCTCTTTCAACT TGGCTTTCATGGTTTTTAGCAGGACAATTACATGCATATCCAAAATCTTGGATACCATCCTCTATGAATAGCTTTGAGCTTGCACTTCAGTTTGGGATAT CGGTTATGGTCATAGCTTGCCCTTGTGCTCTAGGCCTAGCCACCCCTACAGCTGTCATGGTTGGTACTGGAGTTGGTGCAACTCAAGGTGTGTTGATCAA AGGAGGAAAAGCCTTAGAAAGTGCACATAAGGTGAATTGTATTGTATTTGATAAGACAGGTACTCTGACAGTTGGGAAGCCAGTGGTTGTTACTACAAAA CTCTTCAAAAATATGTCACTTCAAGATTTCTACCAATTTGTTGCTGCAGCAGAGGTGAACAGTGAGCATCCAATAGGCAAGGCAATTGTTGAGCATGCCA AGAAGACAACAGAATATCATGAACAAAATCATCCCTTGCCAGAAGCAACCCACTTTGTTTCTGTTTCAGGTCATGGAGTGAAGGCAATTGTGAAAAACAA GGAAATAATGGTTGGTAACAAAAAACTGATGTTGGATCATAACATAGGCATTTCAGTAGATGCTGTAGAAATGCTAGCAGAAGCTGAAAATCTGGCTCAG ACTGGGATTTTGGTATCACTGGATGGAGAAATAGCTGGAGTTTTGGCGGTATCCGACCCACTGAAACCGGATGCCAAACAAATTATTTCAATTCTGAAGT CAATGAAGATCAGGAGCATCATGGTGACAGGTGATAATTGGGGAACTGCCAATTCCATAGCTAGACAAGCTGGTATTGAAACTGTCATTGCAGAGGCTCA ACCTGAGGCCAAAGCTATCAAAGTAAAAGATTTGCAGAGTTCAGGGTACACCGTGGCAATGGTTGGAGATGGAATAAATGACTCGCCGGCACTAGTGGCA GCTGATGTAGGAATGGCAATAGGTGCAGGCACTGATATAGCTATTGAAGCAGCTGACATAGTTCTAATGAAGAGCAACTTAGAGGATATCATCATTGCCA TTGATCTTGCTAAGAAAACTTTCTCACGTATTGGTCTGAACTACATTTGGGCTCTTGGATATAATCTTCTAGCTATTCCAATTGCTGCAGGGGTCCTTTA CCCATTCACTAGGTTCAGGTTACCACCATGGATTGCCGGAGCCGCTATGGCCGCTTCTTCTGTTACTGTTGTTTGTTCCTCACTCTTGTTAAAGAATTAC AAGAGACCAAAGATGCTAGACAACTTGGACATAAATGGTATTAAGATTGGATAGTCAATCAACATGTGAATTGTAAGTTTATTCGGATAGCATTTAATAA AACAGTATTGTATAAGTACAAAGTAGCCAAGAAAATACTGTCAAAATATGAAGACAGGGTGAAAATAGTTGCAGGGATCCAAATTCACATGATCTCACCA AGTGATGCAATTGTGTCTCTATCATACCATTTGTATGTAAGATCATTAGATATAAAAATACAATTTCCTAATTCTACCAGGGAAGATTTTTATTCTAGAA AACTAAATATATTATTTTTACTATACTTTATAAAGTATATATTCTAAAATAATTG
• Tissue: pods
• Gene name: LI_gene_183393;
• Additional information: details;

Expression of Ll_transcript_517277

FPKM

• PAB: 2.5
• PNAB: 0
• PS1: 2
• PS2: 2.4
• PS3: 4.3
• PW1: 1.6
• PW2: 0
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_517277

• Blastp: Probable copper-transporting ATPase HMA5 from Arabidopsis with 73.06% of identity
• Blastx: Probable copper-transporting ATPase HMA5 from Arabidopsis with 73.06% of identity
• Eggnog: p-type ATPase(COG2217)
• Kegg: Link to kegg annotations (AT1G63440)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019420907.1)
• Pfam: Heavy-metal-associated domain (PF00403.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;