Ll_transcript_517293

• Id Trinity: TRINITY_DN51240_c2_g1_i17
• Name Transcript: Ll_transcript_517293
• Sequence: GTTGTAGTAGCTGTGATGAATGATTTTTTCTGTGACAGGAGGCCCTTGCGTGCTTCCATCAACAACACCGTTGGAGCCACTAGTCTTGTTACTCTTGAAA GACTCAACTTATTTCTTTAGGGTCCCATGTTTCCCTTATTCTCTCATGAGCCACATTTCTTTTCCCATTGGATTCTATATATAAAACCAGCTGCACCATC ACAAACCATGCTCATCATCATTATCATAAAGTAGTTTATTATAAAGTTTAAGCAGCTCATAAAATTTAGCAGCAAAGTAAGTTAAGTTAATGGGTAGAAG CAAGTTTGAGGCATGGAAATGCATGAACAAGTTTCACTGCTGTGGGAACCTGTCACCACAACCACACTACCCTTCAATCACAAGGTACCCAAAGAAGGAG GAGGTAGTGGTGGTGGTGGAATCAGGATCAGAATCAAAAGCTGTTTTTAGTGTTATTGGAATGACTTGTGGTGCTTGTGCTGGATCTGTTGAGAAAGCTA TAAAGAGCTTACAAGGGATTAGAGAGGCCTTTGTTGATGTTTTGAATGATAAAGCTTTGGTTCTTTACCACCCTTCTATGGTTAACAAGGAGAGAATATG TGAAGCCATTGAAGATGCTGGATTTCAAGCCAAGTCCATTGATGAAGAAACCAATGACACCTCTTCACAAATATGTAGAATACACATTAAGGGCATGACA TGTACTTCTTGCTCCTCCACCATTGAATCAGCTCTACAAACCATGCATGGGGTGAAGAAAGCAAGGGTGGCCTTAGCAACTGAAGAAGCAGAAATCTGTT ATGACCCTAACATTGTGAGCCACAACCAGCTAATGGAAACTATAGGAGATGTTGGGTTTGAAGCCATATTAATAAGCACAGGGGAACACATAAGCAAGAT AGAGTTTAAGATTGATGGCATTCTAAATGAGGAATCAATCAGTGCTATTGAACATTCTCTGAAGCCACTACCAGGTGTTGAAACTATAGACATATATCCA CACATTAATAAAATTACCATAACTTATAAACCATATATGACAGGACCTAGAACCTTTATACAAGTTATAGAATCTACTGGATCAGGTTGTTTTAGAGCAG TGATATTTCCAAGTGAAGGAGGAAGAGAAACACATAGACAAGAGGAAATTAAAAGATACTTCAAATTCTTCATATGGAGTTTGGCTTTAACAATTCCTGT TTTTTTAACATCCATGGTACTTATGTATATACCTGGAGTTAAACATGTTCTAGACATGAAAGTTGTTAATATGCTGAACATTGGATTGCTCTTGAGGTGG GAGTTTTCTACTCCAGTGCAGTTTATAATAGGCATGAGATTCTACATTGGTTCATATAAAGCATTGAGAAAAGGTTCTGCTAATATGGATGTGTTGATTG CATTAGGAACCAATGCAGCATATTTCTATTCTGTCTATGTTGTAGCAAGAGCAGCTTTCTCTAAAGACTTTGAAGGCAGTGATTTTTTTGAGACTAGTGC TATGCTTATCTCATTTATCCTACTTGGCAAGTATTTGGAAGTGTTGGCAAAAGGGAAAACATCTCAAGCAATTGCAAAGCTTATGGATTTGACACCTGAC ACTGCAACCCTTCTAACTCAAGATGATGAAGGAAATGTGATTAGTGAACAACAAATTGATAGCAGGTTGATACAAAAGAATGATGTGATCAAAATTGTGC CCGGCGCAAAAGTAGCATCAGATGGTGTTGTCATATGGGGAAAAAGCCATATAAATGAGAGCATGATAACTGGAGAGGCTAGGCCTGTGGCTAAGAGGAA GGGTGATATGGTGATTGGAGGCACTGTGAATGAGAATGGGGTTTTGCATGTCAAGGTAACAAGAGTTGGATCAGAGAGTGCACTCTCCCAAATTGTTAGG CTTGTTGAGTCTGCCCAAATGGCTAAGGCACCAGTGCAGAAACTTGCAGACCATATTTCTAAATATTTTGTTCCTTTGGTCATTTTGCTTTCTCTTTCAA CTTGGCTTTCATGGTTTTTAGCAGGACAATTACATGCATATCCAAAATCTTGGATACCATCCTCTATGAATAGCTTTGAGCTTGCACTTCAGTTTGGGAT ATCGGTTATGGTCATAGCTTGCCCTTGTGCTCTAGGCCTAGCCACCCCTACAGCTGTCATGGTTGGTACTGGAGTTGGTGCAACTCAAGGTGTGTTGATC AAAGGAGGAAAAGCCTTAGAAAGTGCACATAAGGTGAATTGTATTGTATTTGATAAGACAGGTACTCTGACAGTTGGGAAGCCAGTGGTTGTTACTACAA AACTCTTCAAAAATATGTCACTTCAAGATTTCTACCAATTTGTTGCTGCAGCAGAGGTGAACAGTGAGCATCCAATAGGCAAGGCAATTGTTGAGCATGC CAAGAAGACAACAGAATATCATGAACAAAATCATCCCTTGCCAGAAGCAACCCACTTTGTTTCTGTTTCAGGTCATGGAGTGAAGGCAATTGTGAAAAAC AAGGAAATAATGGTTGGTAACAAAAAACTGATGTTGGATCATAACATAGGCATTTCAGTAGATGCTGTAGAAATGCTAGCAGAAGCTGAAAATCTGGCTC AGACTGGGATTTTGGTATCACTGGATGGAGAAATAGCTGGAGTTTTGGCGGTATCCGACCCACTGAAACCGGATGCCAAACAAATTATTTCAATTCTGAA GTCAATGAAGATCAGGAGCATCATGGTGACAGGTGATAATTGGGGAACTGCCAATTCCATAGCTAGACAAGCTGGTATTGAAACTGTCATTGCAGAGGCT CAACCTGAGGCCAAAGCTATCAAAGTAAAAGATTTGCAGAGTTCAGGGTACACCGTGGCAATGGTTGGAGATGGAATAAATGACTCGCCGGCACTAGTGG CAGCTGATGTAGGAATGGCAATAGGTGCAGGCACTGATATAGCTATTGAAGCAGCTGACATAGTTCTAATGAAGAGCAACTTAGAGGATATCATCATTGC CATTGATCTTGCTAAGAAAACTTTCTCACGTATTGGTCTGAACTACATTTGGGCTCTTGGATATAATCTTCTAGCTATTCCAATTGCTGCAGGGGTCCTT TACCCATTCACTAGGTTCAGGTTACCACCATGGATTGCCGGAGCCGCTATGGCCGCTTCTTCTGTTACTGTTGTTTGTTCCTCACTCTTGTTAAAGAATT ACAAGAGACCAAAGATGCTAGACAACTTGGACATAAATGGTATTAAGATTGGATAGTCAATCAACATGTGAATTGTAAGTTTATTCGGATAGCATTTAAT AAAACAGTATTGTATAAGTACAAAGTAGCCAAGAAAATACTGTCAAAATATGAAGACAGGGTGAAAATAGTTGCAGGGATCCAAATTCACATGATCTCAC CAAGTGATGCAATTGTGTCTCTATCATACCATTTGTATGTAAGATCATTAGATATAAAAATACAATTTCCTAATTCTACCAGGGAAGATTTTTATTCTAG AAAACTAAATATATTATTTTTACTATACTTTATAAAGTATATATTCTAAAATAATTG
• Tissue: pods
• Gene name: LI_gene_183393;
• Additional information: details;

Expression of Ll_transcript_517293

FPKM

• PAB: 0
• PNAB: 1.4
• PS1: 0.1
• PS2: 1.6
• PS3: 0.1
• PW1: 0
• PW2: 0.9
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_517293

• Blastp: Probable copper-transporting ATPase HMA5 from Arabidopsis with 73.06% of identity
• Blastx: Probable copper-transporting ATPase HMA5 from Arabidopsis with 73.06% of identity
• Eggnog: p-type ATPase(COG2217)
• Kegg: Link to kegg annotations (AT1G63440)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019420907.1)
• Pfam: Heavy-metal-associated domain (PF00403.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;