Ll_transcript_518187

• Id Trinity: TRINITY_DN51259_c3_g3_i1
• Name Transcript: Ll_transcript_518187
• Sequence: CTCCGTACAAAAGTTCCAAACCCCACTCACTTCATCACTTACCTGACTCGATCGACTTCACAATTCAAATTTCAAAACACAAACTCGAACGCTTCCGAGT TGACTCAATGGAACCGAAACCCGAGTCATCACCTACCGAGTCCGACTCATCTCGAGGACGATCCACCACTCGCCCTAGGCTCTTCATCAAGGAAATGGTG ATGCGCAATTTCAAATCCTACGCTGGCGAACAACGCGTTGGTCCATTCCACAAGAGTTTTTCGGCTGTGGTTGGACCTAACGGGGGTGGAAAGAGTAATG TGATTGATGCGATGTTGTTTGTGTTCGGGAAGAGAGCGAAGCAGATGAGGCTGAATAAAGTTTCTGAGCTTATTCACAATTCCACCAATCATCAGAATTT GGACAGTGCTGGTGTTTCCGTTCATTTCCAGGAGATTGTTGATTTGGAAGATGGAACATATGAGGCTGTTCCAGGGAGTGATTTTGTGATTACCAGGGTG GCTTTCCGGGATAACTCATCTAAGTATTACATTAATGATCGTTCGAGTAACTTTACTGAAGTTACCAAGAAACTGAAAGGGAAAGGTGTTGACCTTGATA ATAACAGGTTTCTGATCCTTCAGGGTGAAGTTGAGCAGATTTCACTCATGAAGCCAAAATCTCAAGGACCTCATGATGAAGGTTTTTTAGAATATCTGGA GGACATCATCGGTACTGACAAATATGTTGAAACAATTGATGAATCAAATAAGCAGTTAGAATCCCTGAATGAGAGAAGATCTGGGGTTGTGCAAATGGTT AAGCTATCTGAGAAAGAAAGGGACAACTTGGAGGATGTAAAGAATGAAGCAGAAGCATTCATGTTGAAAGAGTTATCTCTTTTAAAATGGCAAGAGAAAG CTACAAAGTTGGCTGTTGATGATACAGATGGAAAAATGGTTGAGTTACAAGAGAATGTTTCTACCCTAGAAGAAAATCTGAAGGCTGAAAGGGATAAAAT TAAAGAAAGTAAACAAACTCTGAAGGAGCTTGAAACTAAGCACAACAACTACATGAAAAGACAAGAGGAGCTAGATAATGACATGAGGAAGTGTAAGGAA GAGTTCAAGGAGTTTGAGAGGCAGGATGTCAAGCATCAGGAAGATTATAAACATTTGACTCAGAAGATCAAGAAGCTGGAGGACAAAGTTGAAAAGGATT CAAAAAAACTTGAAGCCCTTGTAAAGGAGGGTGAGGACTCAACTGATCTAATACCGAAACTTGAGGATGATATCCCAAAACTGCAGAAATTATTGATCGA AGAGGAGAGGTTGTTAGAAGAAATCATTGAGACGTCCAAAGTCGAAACTGAAAAATACCGCTCTGAGCTTTCTAGAGTCCGTGCTGAGCTTGAACCTTGG GAAAAACAATTGATCGAGCACAAGGGAAAACTTGATGTTTCATCTAATGAGAATAAGCTTCTAAATGAAAAGCATGAAGCTGCTTGTGAAGCTTTTAAAG ATGCTCAAAAGCAGATGAAAAGCATATCAGAAACAATCAAATCAAAAACCGCCAGCATTTCTCAAATTAAGAGTGACATTGAAAAGAGCAAGTCCGAAGC ATCAAAAGCTCACCAAGTGGAAAAAGACTGTATCATAGAACAAGATGAACTCATTCCTCTTGAACAAGGTGCTAGACAGAAGGTTGCAGAGCTGAAATCT GTTCTAGATTCTGAGAAGAGTCATGGATCAGTTCTAAAAGCGATCTTGAAAGCTAAGGAAACCAAACAGATAGAAGGAATATATGGCCGTATGGGTGATT TAGGTGCTATTGATGCAAAGTACGATGTTGCGATTTCAACAGCATGTTCTGGACTTGATTATATTGTGGTTGAAACAACAAATGCAGCACAAGCCTGCGT TGAGCTACTTCGTAGAGAGAATCTTGGTGTTGCTACTTTCATGATATTGGAGAAGCAAGTTGATCTTCTTCCAATGTTGAAAAAAAAAGTAAGCCCTCCA GAGGGGGTTCCACGTCTTTTTGATTTAGTTAAAGTTCAAGATGAAAGAATGAAGCTTGCTTTCTTTGCTGCACTTAGAAACACAGTTGTCGCTAAGGATC TTGACCAGGTCAGTTATGCTTTTGTAGCGGAATACTCTATTTTGATAATAAATATCCAGGGCCATTAATCATTATACTGTAATTACCAGTTACTCGCAAT GATATAAAATATATAGCTTAGGTTTTAGACAGCACATTTTTAACTTTTCATATCAGTGAAGGAGACCACTGAATACCAACCTTTTTTTCTACCTCCGCCA TATTTTAGGCCACACATATAGCATATGGTGGAAACAATGAATTTGGACGTGTTTTTTACTCTTGATGATGCACTCTTTGAAAAATCTGGAAAGATGAGTG GTGGGGGTGGTAAGCCCCATGATGGGAAGAGGGGGACATCTATTCGGCAATAATCCCATCCTTGGTCCTCAGTTAGGTGATGAATGTTAAATCTCTTTCT GTTGATCTGAAGATAATTCTTCAGAGACATACAGAAATATTCATCATCATGAACTTATCAGGAGGAGGAAGAAGCTATCGAGAGAAGAAAGAAATATTAG GGTTTGTAATGTGAGCGAAGCCAGAGACTGTGTGAAGAACCCTACATTTGTATATAGACATACACATATATTTGACATCACGTTCTGCCTTGCACGGGAG TAATAATGTTTGTTTTAATAGAGCATTGCAACCGGAGTAATAGTTTGTTTTAGTAGAGTAAAGAAAATAATTAAATCCATTATGGTGGCCTGAGATCTAT CTTTTGTCTGCCCATGTCTAGTACCCTTTAATTTTTTATTTAGCTAAAAAGCATTCCATCCCATGGCATGGTTTCTTTGTTTGATATGGTAGAGTTGAAT CTTGAAATCAAGTTAACATTGCAATGCAATTCCTTCTCTCATGGTTTGGACTGGAGGTAATGTCTAATCCAATTGTGCAACCATAAAATCACCTTTCTTA TATTAATTAATGCAGTTCAATTATAAAATTTGCTGAGCAATGCCTAAATCCAGAAATGAGAGCATCAATTTTTAGTCCTCGGCTTATGGAATTGATGCAT TGCATTTTAT
• Tissue: pods
• Gene name: LI_gene_183548;
• Additional information: details;

Expression of Ll_transcript_518187

FPKM

• PAB: 0.6
• PNAB: 1.3
• PS1: 2.2
• PS2: 1.7
• PS3: 2.1
• PW1: 1.2
• PW2: 1.4
• PW3: 1.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_518187

• Blastp: Structural maintenance of chromosomes protein 4 from Arabidopsis with 74.08% of identity
• Blastx: Structural maintenance of chromosomes protein 4 from Arabidopsis with 74.08% of identity
• Eggnog: Required for chromosome condensation and partitioning (By similarity)(COG1196)
• Kegg: Link to kegg annotations (AT5G48600)
• CantataDB: Link to cantataDB annotations (CNT0001234)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019432441.1)
• Pfam: RecF/RecN/SMC N terminal domain (PF02463.18)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;