Ll_transcript_517960

• Id Trinity: TRINITY_DN51270_c2_g1_i12
• Name Transcript: Ll_transcript_517960
• Sequence: GTTAATAAGGTTTTCATTATTATTCATTAGGTGTTTGATGAAATGCCTCAATCAACTTTTTTTAGTTAAAACATTACCATTGTTTTTTTATCAAGGTTTT AGTATTGCATAAGTCTATTTATAACGATGGGTTAAGTTTTTTTTTGTGTGTTTGTGTTTCTTTTTTTGTGATGAATTTGCTTTCCATGAGCAAGATTCAT TTTTAACTTTTTGTGTGTTTGCTTCTTTGTTGCAGCAAGATTCATTTTTTACTATGTTTCTAGTGTTGGTTTTGCTAATGACAAAGATGGTGAGGATGGT GGTACAAGGAAGTGGTTAGAAGTTGAGAAAAAATATGTTGCCATTATTATATTTCTTTTTTTCTTTTCCTTGTTTTGCTGTATTTTGTTGTTCGTTAAAA TCCAAAAGACAAGGCAATTTGGAACCTTTTGAGTACAGTGGATATTTTCATGTAGTACAGTGATGAAAATGTTAAGGCTTTTTCCTTTTTCTTTTTAGCT TAAAGTTTAAACTTAGTTAGCAGAAGCACATCTACGGATATTATTTCTAAACTTCATAAAATACATACTATATAAATTTGATAAGTTATTTAACCAAAGA GTTATAGTAGGATAGGGGTTTTCATTGTGGTCTTACGTAGTAAAGCTTGTTGGTTCGATATCACAAATTTTAATATAATAAAGAAGTACTAATAAAAAAT ATTTTAAAATAAATTATAGCAAAAAGTATTACAAATATTTTTACTTTTTCTTTAGATATTTATTAAAACAATGTTTTAAAAAAATTCTAATATAAATGCA TTAAATAATATTTTTAAAAAAATTAATTTTTTGTATGGGAACGACAAAAAGACTAAATTTTTATGGGACTAAAATGATATTTAATATTTAATAGAAACTA ATATGATAGATACCAAATTTGTTGGGGAATAAAATGGTGTTTACTTCTTTTTTTAATTATGAAACCAACAAATATGCTTTCGTAACCCTTCATGTGCCAT TATATGTTATTGGTTAAAAAAAATATTTAAATTAAAAAAAATAATTATTAATCATATTATGACCAATCATAAATGGTGGTGGTACATAGAGTGAACTTAT GTGGGAGAGAAGATGTCCCCCGAACCAAACAGACACATGATCTGTATCATTTAGTTTCATCCTCACCTTTGTATATTCTACAATTTCTTAAGGTTTATAA ATAAACTTCGAAATCCTCAATAAGAAGAATCTCTCGTTAATCATCCTTTACCTTCTTTTATTTCGCTCTCGAATCCTGTTATTGGATAATTCTTTTTGTT CTCGTTTGATTGGTACCTCAACAGCGCCACCGGTTTTCCAATTCCTGTTATTCCTCTCTCTTGGATCATTCAAGACAAACATTGTTTTGAAATTGATATG GACCCGTCTATTGTGAAGCTACTGGAAGATGATGAGGACGAGACGATGCATTCTGGGGTGGACTTGGAAGCGTTCCAGGCTGCCTTAAATAGAGATATTG GAGGTGGTGCGTCTGCTTCTCAGCCTTCTGGTTCAGAGTCCGCTTTGTCTCAAGGAATCAACAACTCATTCAGTCAGGCAATGCCACAGTGGCCAACTTC TAGTCATGACAATAGAACTGACGGTCAAAATCAAGAGTCTAAAACTGCGCAGCAGCAAGAGCAACCTCCGTCTGAGGTGGAGCTGAAGCAACATGTATCT CTTCCTGAACAACCCCAACATGTTGCTTCACAAGTTGTAAATAATCCTCCCTTTTCACAGAAACAATCTCAAGATGAATTTCACCAATCGCAGAATGTAC AAGTTTCCGTCCAAAATTCTCAAATGATTGGAATTCAAAATTCTGGAAAAGATCCTGTCCATAATCACGAGATAGTCCAAACACATAACCCCAGTAATGA ATCTCAGTATGCGAAGTTGCAGCAGATCAGTAATCAACAGGATACCATTACTGAGCAGCCAAGAAGCCAAATGTACCGGCCTATTAAACAGGTACCATTT GGCCTGTTGCTACCCATCTTGATTCCCCAACTTCCCAAAGATAGAGCCATGCAACTGCAAACTCTATTTACTAAATTGAAGAAAGATGAGGTTCCGAAAG ACAGTTTTGTGCGGCTTATGAAAGGTATTGTAGGGGACCAGATGCTTAGATTAGCATTAGCAAAAGTGCAACAGGCAAGGCCCAACCAAGGTCCTGCTGG CCAGCAACCTGCTGTAAGGATGCCAACTGTTGGTTCAGGTGCAAGACAATTTAATGATCCCCATGCTTTAGCACAACTTCATCAGAGAAGTATGGATGCT ACTGCAGACCAATCTCGTATGACATCATCCGCTGTCCATAATGTGGGGAGCAATGCTAGAATGTCTCAGGAATTGGATGCTAAAATAGAATCGCAAGGAT TGCAAACAAGCCATTTACCAACTTCCAGTTCCAACGTTGGTAGACAAGAAACAGAAAGGTCATCAGTTCACGTACAAGGGCTTAATAAGCAGCAGCAGCA ACATCTACATTTCTCTTCTGCATATGGAAGTACTGGTGGTAATTATAACCCTTTTTCTGGAACAACCACTAGTTCCACTTCATCTATCAAACCACAACCG CTTGATTCACACTTGGGTCAAACTCCACATCAAAACACTGGTCGAAATCACATAGGTGGGGTACCACAAGGTTTGAATGTCACTAGTATGCCAAAACTCG AACGAGATAATTCTTTCAGTGATCCCAAGAGGCTACCTGGTGGATCTGTGTCGTCTGTGGTAAATAATACAGCACCCCAGCAAACTTCGAATGCTTGGAA ACCGTCAATAAACAAAGAACAAAATGTGAGCTTGTTGTCATCTGTTTCATATGTAAAAAAAGAACCTAGTGACCCATCTACTGAGCAGCAACATAGGCTT AATTTGTCTAAATTGCATGGCTTCCCTTCTGTTAATTCTTCACAGATTGAACATGGTAGTTCTAATCAAGTAATTGTAAAGGATGAGTTTTCAAGAGGTC TTCCAGCCTCCACAAGCATGCCACCAACAACATCTACAGGCCTGCCACCACACAATTCTGCTTCCCCTTCTGTAATGACCCAACCAGACCCTAGTGTCTC AATCCCATCAAGCACTTCTGGGATTATGGCAAGGACACCTGTGAAAAAGCCTTTTCCTGCCCAGAAGAAACCACTTGAAGCACTTGGTTCCTCACCTCCT CCTTCAAGTAAGAAACAAAAGACATCTGGGGGATCTGTAGAACAAAGCATTGAACAACTTAATGATGTCACTGCTGTTAGTGGAGTTGATCTTAGGGAAG AGGAAGAGCAGTTATTTTCAGGGCCTAAGGATGACAGTCGAGTTTCAGAAGCATCTCGAAGAGCTGTGCAAGAAGAAGAGGAAAGGCTGATTTTGCAGAG AACTCAATTGAATAAAAAATTGGTTGAGATTTTGGTCAAGTATGGCTTGAAGGGTATTGGCAATGATGTAGAGAGATGCTTGTCACAGTGTGTGGAGGAA AGGATGCGGGGACTAATAAGTAACCTGATTAGACTGTCAAAACAGGTCAGTTGTTTTCTCCTGCTGCTTATGTAAATAATCTTTCATAATTGCATAAAAA AAATTAAGTTCAAGAATTTTCCTACCAGCGGGTTGATTTTGAGAAGACAAGACACCAGACTGTTGTCACCTCAGATGTTCGGCAGCAAATCATGACAATA AATAGAAAATTAAGGGAAGAGTGGGAGAAAAAACAGGCAGAAGCAGAGAAGCTTCGAAAAAGTAATGATGTGAGTTCCACACCTTGAATGTGTAGTGAGT TACAAGATAAAAGTCTGTCCATGCACATTTCATCTGTGTGTCTATAATGTAACTCGCCAGTTTGCATTTCAAACCTGTGTCTATCATGTAATCCTTATAA TGCTATTTTGAAGTATAGATCGAGAACAATACTGGAGTTGATGGTGACAAGGAGAAGGATGATGGTCGTAAATCAACAAAGGTGAACAAGGAAGAGGATG AGAAGATGAGGACAAATGCTGCAAACGTTGCTGCCCGCGCTGCTGCTGGGGGAGATGATATGCTGTCGAAGTGGCAACTTATGGCCGAACAAGCCAGGCA GAAACGTGAAGGGGGGACAGACATGTCATCTGGCTCTCAATCAGCTAAAGATGTGAACCGCAAATCTTCATCAGCATCCGGAAGGAGTATGAAGGATAAT CAAGAAGGGGATAAAAAAGGTCCAACTATTCCATCTTCAGGGACTTCTAGAAAAGATGGCAAAAATCATGCTCTTACATCTCAAACTAGGGTAGCTCGAA GCATCTCTGTCAAGGATGTAATTGGAGTCCTGGAGAGGGAACCCCAGATGTCCAAATCACCACTCATATATCGCTTGTATGAGAGAATTCATTCTGATGC CCCAGCTGAACAAGGTTAAACTAAGCACCCAAGTGTTCTTAGTTCTGTATTTTTATTGCGTAAACTTTTTATTAACTTCCTTTTACCA
• Tissue: pods
• Gene name: LI_gene_183630;
• Additional information: details;

Expression of Ll_transcript_517960

FPKM

• PAB: 0.2
• PNAB: 0.2
• PS1: 0
• PS2: 0.1
• PS3: 0
• PW1: 0.2
• PW2: 0.5
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_517960

• Blastp: Transcription initiation factor TFIID subunit 4b from Arabidopsis with 42.91% of identity
• Blastx: Transcription initiation factor TFIID subunit 4b from Arabidopsis with 42.65% of identity
• Eggnog: RNA polymerase II, TATA box binding protein (TBP)-associated factor(ENOG410XQS6)
• Kegg: Link to kegg annotations (AT5G43130)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019431852.1)
• Pfam: RCD1-SRO-TAF4 (RST) plant domain (PF12174.7)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;