Ll_transcript_517961

• Id Trinity: TRINITY_DN51270_c2_g1_i13
• Name Transcript: Ll_transcript_517961
• Sequence: GGAAGAACTAACAAAGTATGTAAATGTTTACTAACATTTATTTATTTAAATCAAGTAAATTCCAAGTGATTTTATTAAACCCCCCCGTTGATCACCCATT TCCCAGCTTTCTTTTTATTTCGTTCTCGATTCTCTTGGCGATCCTATCACCTCTTCCATTCAACCAGGTTTCGGAAACAATTGACATCGCATCATTTTTT CGTTTTCACGCGCTTCCTTCTTTTGCTATCTCAACAGTGGCACCGGTTTTCTCACTACTCTTATCGCTCTCTCGGGGCATCCAAGATAACATTGTGGCGT AATTGCTATGGACCCATCTATTGTGAAGCTTCTTGAAGATGATGAGGATGAAACAATGCATTCAGGGGTGGATTTGGAAGCCTTCCAGGCTGCCTTAAAT AGAGATATCGGAGGAGATGCGTCTGCTTCTCAGCCGTCTGGTTCAGACAATGTTTTGTCTCAAGGAAGTAATAATACATTCAGTCAGACAATAAAACAGT GGCCAACTTCCACCCTTGACAAGCGAGCTGACAGTCAAAGTCAAGAGCCTAAAACTGCACAGCAGCAAGAGCAACCTTCATCTGAGGCGGAGCTGAAGCA ACATGTATCCCTTATGGAACAACCACAGCATGTTGCTTCTCAGATTCTTAATAATCCTCCCTTTTCACAAAAACAATCTCAAGATGAATTTCATCAATCA CAGAACATACAAGTTTCCGTCCAAAATTCTCAAATGAGTGGAATTCAAAGTTCTGGAAAAGATCCTGTCCATAATCATGAGGTAGTCCAAACACATAACC CCAGTAATGAATCTCAGTATGCGAAGTTGCAGCAGATCAGTAACCAACAGGATAGCTTCGTTGAGCAGCCAAGCAGCCAAATGAACCATACTAATAAACA GGTACCATTTGGCCTGTTGCTACCCATCTTGATTCCCCAGCTTCCCAAAGACAGAGCCATGCAACTTCAAACTCTATTTACTAAATTGAAGAAAGATGAA ATTCCGAAAGACAGTTTTGTGCGGCTTATGAAAGGTATTGTAGGGGACCAGATGCTTAGATTAGCAATAATAAAAGTGCAACAGACAAGGCCCAACCAAG GACCTTCTGGGCAGCAACCTGTTGTAAGGATGCCAGCTGTAGGTTCAGGTGCAAGACAATTTAATGATCCACATGCTTTAGCACAGCTGCATCAGAGAAG TATGAATGCGGCTGCAGATCAATCTCGTATGACTTCTTCGGCTGTCCAGAATGTGGGGAGCAATGCTAGAAATTCTCAGGAATTGGATGCTAAAATAGAA TCTCAAGGATCACAAACAAGCCAATTACCACCTTCCAGTTCCAACGTTGTTAGTCAAGAAACAGAAAGATCGTCAGTTCACATACAAGGGCTTACTAAGC AGCAGCAACAACATCTACATTTCTCTTCTGCACATGGAAGTAGTGGTGGTAATTATAACCCCTTTTCTGGGACAACCAGTAGTTCCATTTCATCTATCAA CCCACAACTGCTTGATTCACACTTGGGTCAAGCTCCACATCAAAACACTGGTCAGAACCACTTAGGTGGGGCAACACAAGGTTTGAATGTCATCGGTATG CCAAAACATCAACAGCAGAATTCTTTCAGTGGCCCCAAGAGGCTACCTGGTGGGTCTGTCTCTTCCATGGTAAATAATTCAGCACCCCAGCAAACTTCCA ATGCTGGGCAACCATCAATAAACAAAGAACAAAAAGTGGGCATGTTGTCATCTGTTTCTTATGTGAAAAAGGAACCTAGTGACCTGTCTACAGAGCAGCA ACATAGGCTTAATTTGTCTAAATTGCATGGCTTGCATTCTGTTAATTCTGCTCAGATTGAACAAGGTAGTGCTAATCAAGGAAGTGTAAAGGATGAGTTT TCAAGAGGTCTTCCAGCCTCCACAAACATGCCACCGACAACATTCCAACACAATTCTTCTGCTTCCTCATCTGTAATGACCCAACCAAACCCTAGTGTCT CTATCCCATCAAACACTTCTGGGATTATGGCAAGGGCACCTTTGAAAAAGCCTTCTCTTGCCCAGAAGAAACCGCTTGAAGCACTTGGTTCCTCACCTCC TCC
• Tissue: pods
• Gene name: LI_gene_183630;
• Additional information: details;

Expression of Ll_transcript_517961

FPKM

• PAB: 0.1
• PNAB: 1.1
• PS1: 2.1
• PS2: 0.3
• PS3: 1
• PW1: 1.7
• PW2: 1.2
• PW3: 0.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_517961

• Blastp: Transcription initiation factor TFIID subunit 4b from Arabidopsis with 36.47% of identity
• Blastx: Transcription initiation factor TFIID subunit 4b from Arabidopsis with 35.88% of identity
• Eggnog: RNA polymerase II, TATA box binding protein (TBP)-associated factor(ENOG410XQS6)
• Kegg: Link to kegg annotations (AT5G43130)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019429835.1)
• Pfam: RCD1-SRO-TAF4 (RST) plant domain (PF12174.7)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;