| Id Trinity | TRINITY_DN51270_c2_g1_i17 |
|---|---|
| Name Transcript | Ll_transcript_517968 |
| Sequence | GTTAATAAGGTTTTCATTATTATTCATTAGGTGTTTGATGAAATGCCTCAATCAACTTTTTTTAGTTAAAACATTACCATTGTTTTTTTATCAAGGTTTT AGTATTGCATAAGTCTATTTATAACGATGGGTTAAGTTTTTTTTTGTGTGTTTGTGTTTCTTTTTTTGTGATGAATTTGCTTTCCATGAGCAAGATTCAT TTTTAACTTTTTGTGTGTTTGCTTCTTTGTTGCAGCAAGATTCATTTTTTACTATGTTTCTAGTGTTGGTTTTGCTAATGACAAAGATGGTGAGGATGGT GGTACAAGGAAGTGGTTAGAAGTTGAGAAAAAATATGTTGCCATTATTATATTTCTTTTTTTCTTTTCCTTGTTTTGCTGTATTTTGTTGTTCGTTAAAA TCCAAAAGACAAGGCAATTTGGAACCTTTTGAGTACAGTGGATATTTTCATGTAGTACAGTGATGAAAATGTTAAGGCTTTTTCCTTTTTCTTTTTAGCT TAAAGTTTAAACTTAGTTAGCAGAAGCACATCTACGGATATTATTTCTAAACTTCATAAAATACATACTATATAAATTTGATAAGTTATTTAACCAAAGA GTTATAGTAGGATAGGGGTTTTCATTGTGGTCTTACGTAGTAAAGCTTGTTGGTTCGATATCACAAATTTTAATATAATAAAGAAGTACTAATAAAAAAT ATTTTAAAATAAATTATAGCAAAAAGTATTACAAATATTTTTACTTTTTCTTTAGATATTTATTAAAACAATGTTTTAAAAAAATTCTAATATAAATGCA TTAAATAATATTTTTAAAAAAATTAATTTTTTGTATGGGAACGACAAAAAGACTAAATTTTTATGGGACTAAAATGATATTTAATATTTAATAGAAACTA ATATGATAGATACCAAATTTGTTGGGGAATAAAATGGTGTTTACTTCTTTTTTTAATTATGAAACCAACAAATATGCTTTCGTAACCCTTCATGTGCCAT TATATGTTATTGGTTAAAAAAAATATTTAAATTAAAAAAAATAATTATTAATCATATTATGACCAATCATAAATGGTGGTGGTACATAGAGTGAACTTAT GTGGGAGAGAAGATGTCCCCCGAACCAAACAGACACATGATCTGTATCATTTAGTTTCATCCTCACCTTTGTATATTCTACAATTTCTTAAGGTTTATAA ATAAACTTCGAAATCCTCAATAAGAAGAATCTCTCGTTAATCATCCTTTACCTTCTTTTATTTCGCTCTCGAATCCTGTTATTGGATAATTCTTTTTGTT CTCGTTTGATTGGTACCTCAACAGCGCCACCGGTTTTCCAATTCCTGTTATTCCTCTCTCTTGGATCATTCAAGACAAACATTGTTTTGAAATTGATATG GACCCGTCTATTGTGAAGCTACTGGAAGATGATGAGGACGAGACGATGCATTCTGGGGTGGACTTGGAAGCGTTCCAGGCTGCCTTAAATAGAGATATTG GAGGTGGTGCGTCTGCTTCTCAGCCTTCTGGTTCAGAGTCCGCTTTGTCTCAAGGAATCAACAACTCATTCAGTCAGGCAATGCCACAGTGGCCAACTTC TAGTCATGACAATAGAACTGACGGTCAAAATCAAGAGTCTAAAACTGCGCAGCAGCAAGAGCAACCTCCGTCTGAGGTGGAGCTGAAGCAACATGTATCT CTTCCTGAACAACCCCAACATGTTGCTTCACAAGTTGTAAATAATCCTCCCTTTTCACAGAAACAATCTCAAGATGAATTTCACCAATCGCAGAATGTAC AAGTTTCCGTCCAAAATTCTCAAATGATTGGAATTCAAAATTCTGGAAAAGATCCTGTCCATAATCACGAGATAGTCCAAACACATAACCCCAGTAATGA ATCTCAGTATGCGAAGTTGCAGCAGATCAGTAATCAACAGGATACCATTACTGAGCAGCCAAGAAGCCAAATGTACCGGCCTATTAAACAGGTACCATTT GGCCTGTTGCTACCCATCTTGATTCCCCAGCTTCCCAAAGACAGAGCCATGCAACTTCAAACTCTATTTACTAAATTGAAGAAAGATGAAATTCCGAAAG ACAGTTTTGTGCGGCTTATGAAAGGTATTGTAGGGGACCAGATGCTTAGATTAGCAATAATAAAAGTGCAACAGACAAGGCCCAACCAAGGACCTTCTGG GCAGCAACCTGTTGTAAGGATGCCAGCTGTAGGTTCAGGTGCAAGACAATTTAATGATCCACATGCTTTAGCACAGCTGCATCAGAGAAGTATGAATGCG GCTGCAGATCAATCTCGTATGACTTCTTCGGCTGTCCAGAATGTGGGGAGCAATGCTAGAAATTCTCAGGAATTGGATGCTAAAATAGAATCTCAAGGAT CACAAACAAGCCAATTACCACCTTCCAGTTCCAACGTTGTTAGTCAAGAAACAGAAAGATCGTCAGTTCACATACAAGGGCTTACTAAGCAGCAGCAACA ACATCTACATTTCTCTTCTGCACATGGAAGTAGTGGTGGTAATTATAACCCCTTTTCTGGGACAACCAGTAGTTCCATTTCATCTATCAACCCACAACTG CTTGATTCACACTTGGGTCAAGCTCCACATCAAAACACTGGTCAGAACCACTTAGGTGGGGCAACACAAGGTTTGAATGTCATCGGTATGCCAAAACATC AACAGCAGAATTCTTTCAGTGGCCCCAAGAGGCTACCTGGTGGGTCTGTCTCTTCCATGGTAAATAATTCAGCACCCCAGCAAACTTCCAATGCTGGGCA ACCATCAATAAACAAAGAACAAAAAGTGGGCATGTTGTCATCTGTTTCTTATGTGAAAAAGGAACCTAGTGACCTGTCTACAGAGCAGCAACATAGGCTT AATTTGTCTAAATTGCATGGCTTGCATTCTGTTAATTCTGCTCAGATTGAACAAGGTAGTGCTAATCAAGGAAGTGTAAAGGATGAGTTTTCAAGAGGTC TTCCAGCCTCCACAAACATGCCACCGACAACATTCCAACACAATTCTTCTGCTTCCTCATCTGTAATGACCCAACCAAACCCTAGTGTCTCTATCCCATC AAACACTTCTGGGATTATGGCAAGGGCACCTTTGAAAAAGCCTTCTCTTGCCCAGAAGAAACCGCTTGAAGCACTTGGTTCCTCACCTCCTCCACCAAGT AAGAAACAAAAAACATCTGGGGGATCTGTAGAACAAAGCATTGAGCAGCTTAATGATGTCACTGCTGTTAGTGGAGTTGATCTTAGGGAAGAGGAAGAGC AGTTATTTTCAGGGCCCAAGGAGGACAGTCGAGTTTCAGAAGCATCTCGAAGAGCTGTGCAAGAAGAAGAGGAAAAGCTGATTTTTCAGAGAACTCAATT GAATAAAAAACTGGTCGAGATTTGTTAGTGGCCTCTTCTTGCCATACCTCTGTCCATCTGTTTTATTTCATTCCTTTTGAGCTTTAGTTATGTACTAGGC ACCCAACCTTACAGCTTTTCAATGTTGTTACTCTGGCAGTGGTCAAGTATGGCTTGAAGGGTATTGGCAATGATGTAGAGAGATGCTTGTCACAGGTGAG ATTTAGGCTAATTTTTACTTTTCATTTCATTAGGGTTGCATTTATTCTTATAAATTATAACTAAAAGTAAATGTTTAGTGTGTGGAAGAACGAATGCGTG GACTAATAAGTAACCTGATTAGACTGTCAAAACAGGTCAGTTGTTTTTTCTCGCTGCTTGCATGAATAATCTTTCATAATTGCATAAAATTTATTACACA CAAGTATTTTCCTATCAGCGGGTTGATTTTGAGAAGACAAGACATCGGACTGTTGTCACCTCAGATGTTCGGCAGCAAATCACGATAGTAAATAGAAAAC TAAGGGAAGAGTGGGAGAAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_183630; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_517968
| Blastp | Transcription initiation factor TFIID subunit 4b from Arabidopsis with 41.21% of identity |
|---|---|
| Blastx | Transcription initiation factor TFIID subunit 4b from Arabidopsis with 41.07% of identity |
| Eggnog | RNA polymerase II, TATA box binding protein (TBP)-associated factor(ENOG410XQS6) |
| Kegg | Link to kegg annotations (AT5G43130) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019429835.1) |
| Pfam | RCD1-SRO-TAF4 (RST) plant domain (PF12174.7) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |