Ll_transcript_518522

• Id Trinity: TRINITY_DN51280_c2_g1_i4
• Name Transcript: Ll_transcript_518522
• Sequence: AATAACTTGTAGTTTGCACTTTGTACCTTGTTGAGCATCTTAGCAACTGAGTTGACTTGGGTGGTGTAGTTGCATACTTCCCAAAAACCCAACAAAAGGA CAAAACCTCCTCATTATAGAGTAATGAGTGGAGCGCGTACACTCACACCAACAACAACTTCAGCCATCTTATACACACAATTAAACCAGGGTTCTTCTCA CTTCACAAATATCTCTAACCCTTCAACCCCTTTTCCTTTAATCCAATTCCAACCTCTTACTTTCCATAAAGAATCTCAATAGGTGCATGAAATCTGGTGA TCTCCCATCCTATTGAGAATGAGAATATCACCGGAAATTTTGATTAAATAACAGAAACGTACTGCTGGAAAATGGGAGGTTGCTGTTGTTCTGCAAGAAA ACCTCACCTGCCGGGAACACCAGTGTATTACTATTACCCACCATCTTTGGCAGAGCGCGAGTCGTTGAACACTACCGATGGTTCGTCTGCTTCACTCACT GCTGGATTGCTCGTAGGTTTGGACATAGAATCCTCCACACCAGATACATATCAGTCCCCTCCTGTACCTCTGCCTTATGATACAGTCCTTGGAGTTCCAG CATCAACGTACTCTGAAGCAGGCAGAGAAACACCTAGCGGTACTAGTTTTGAAACTTCGGTGAGATGTGAAGATCTTGTAGAATCAGAATGCAAAGCTCA AGCTGATTCCGAACCCATGTCTCCAAAGAAACCAGAACTGTCAAAATCAAATGAATCTCATGCATTAGCGACAGAAGAAGAGGATGTCTGTCCAATCTGC CTTGAAGAATATGATGTTGAGAATCCTAAAAATCTGACAAACTGTGATCATCAGTTTCATCTCTCTTGCATTCTTGAGTGGATGGAAAGAAGTGATTCCT GTCCTATATGTGATCAGGATATGATATTTGACGAAATGACACTGAACTAGATTGATTCTCTTGAAATGAAGCTTGCTAAATATCTGTGTGGAAGATAGAT GAAACCGGTTGGATGATGGTACAGATTTCATTTTCGAATCGCCGTGCTTTTAAAAAGTCGTTGTTCTAGTAGGTACATTCATTAGGGGAATAGAATTGTT AGAAGAAGAATGAGGAGGTTTTAACTGAATGCTACAACCACATTGCTGAAGAAAGATGATGGAATTCATGTTCAAAAATAGCTTTTTACTTGTGTTGATT TCTTGTTCTCATTTCTTGTACAAAATTTTCAATGTTTATTTTATTTCAATGATATTTCGTTTGTTTGAAAGAAAAAGAAAAAAAATTATATTGGTGTAGT AATTTGTAAATGAAGTTTGTTTTACATTTCCAATGTATATATATCCTGGTGGATGTTGGGGATTACTCCATATTTTTTTGTTTTAAGTGCAATTAGATTG ATCATACACTAATACTGTTTTTATATTAGATAACTGTTCTGGTTGGTAATAAAAGGGGTAATTGTAAACATTGCAGTAGATGCTATTGATTTGTTGTTTG GAGATAATGTTAATTTGTTTCTATTCTCTTTTTGGTTTTTGAAAGTTGGGAAAAGAGAATAATAAATTACAGG
• Tissue: pods
• Gene name: LI_gene_183732;
• Additional information: details;

Expression of Ll_transcript_518522

FPKM

• PAB: 29.8
• PNAB: 6.8
• PS1: 14
• PS2: 6.6
• PS3: 10.7
• PW1: 11.3
• PW2: 10.1
• PW3: 8.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_518522

• Blastp: Probable E3 ubiquitin-protein ligase RHB1A from Arabidopsis with 54.79% of identity
• Blastx: Probable E3 ubiquitin-protein ligase RHB1A from Arabidopsis with 54.79% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (AT4G00335)
• CantataDB: Link to cantataDB annotations (CNT0000117)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019462195.1)
• Pfam: RING-H2 zinc finger domain (PF12678.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;