Ll_transcript_518791

• Id Trinity: TRINITY_DN51285_c1_g1_i11
• Name Transcript: Ll_transcript_518791
• Sequence: AATATTTAAAAAAATCACTTACAAAAATATTTGACTTGACCCAAATTTAAGATATTAGGAAGAAATCATATTGAGTTTTCCAAAATTGGGAAGAAAATTA TACAGATTTTGAGGAAGAAAATGAGTTTGATGTTATGTTGTTCCCAAATTCCTTTCTTCAGTTTCATTCTCACACACCCTAACTCATCTCCTTCCTCTTC TTATTCCTTCTGTTTCATAGCTATCTTGTCACTCATCTTCCCTATCCCTATCCCTATCCCTATTCCTATTCCTATTCCTATTTTCTCACCTCTCATTAGC TGCACCGTTTCTTAGTTCAAACGCCAACACAAACCTTCATGAACAACAATCTCATCGCTTTTGAATAAGATGTTATGTACATGCCGACACATCCATAGTT GAATAATGGCTGTTGAGGCTTCTGATACACAACACATGTTAGATGGTTTATATGATGATGATGACGACGATGGGCCAGTAACTTTCAAAAGGAGCACAAC ATCTAAGGTAAATCAGACGTGTTCGGAAGTAAGGAAGTCAACTTCTCGTAACCATGATGGACAGTCATATAGACAGACTTCTGATGTACGTACTTCAAAT GGCCAAGGTTCTGGCTTACAGAAGGGTAGGCGTGTCTCATCCGGTATGGTATCACCTACAAAATCTTCTAAAGCGCCTACTTCAATTGCCCAAGGTTCTA GTTTACCCAAGGATAAGATTGTACCATCTGGTATGGTGTCACCAAAGAAATCTTCTCAAGGCATCTCAAGAGCATCAAGTTCACACGTCAATGCCTATCC TGTGAAGTCACCTATAGAAAATACAAAATCACCTTCTTTAGGTGATAAACCAAAGCCTTCTCCGGAATGGAAAACTCCAAGTGATGTTAAGGAGGAAAAT AATTGTACCAGGCACCTTACTGGAGACAATTGTGAAGACTCTGAGGATGAGGATAATAGAGCATTAAGTGTTAGGTTGAAGACGAACTCTAACAATGCTA ACAGAGAAGCCGTTGCTGTTCTTAAGAAATCTTCTGAAGACTTCGATGACGATGAAGATGATATCCCTTTGTCAGCAAGGTTGAAGAATTCTAATTTGGG ACCATCTAGTAGCAAGTATGATGATGCTGATCCGAAGAAACCAATTTCAAAAGTGCAGAAAGGACTAAAAGTTGGTTCCAGTGCTAGTATCAAACAGGAA AGGCCATCTACATTGTCAGTTAAGAGGCCACTGGATAACAAAGCTTCCTTGCACTCGTCAATTAAGAAGCCAAAACTCTCAAATCCAGATGCATTAAGCA GTGCTAAGCAAGTACCAATGAAACCTGAGTCAAAGGTAGAGGATGATGATGATGTTCCTATTTCCCAAAGAATGAAGTTGTCCACATCATCTGATAAATC ATCTTCCTTGAAGAAGTCGAAAAATGTCACTAACGTTAATAAGGCTGGTTCGTCTTTTAAGAAACAGGCCAAGACGTTCAAAAAATCTTCCAATAACTCA GAATATTCCAAATCTACTAAACTTCTTCCTAGCTCTGGTGATGGTCAGAAAAAATGGACTACTTTAGTTCACAATGGTGTCATTTTCCCACCTCCGTATC AGCCCCATGGGGTAAATATGCTCTATAAGGGGAAACCAGTGGTTTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTTTGCAGTCATGCGAGATACAGA TTACATGCAGAAAGATAAGTTCAAGGAAAATTTTTGGACCGACTGGCGCAAGTTGCTAGGAAAAAATCACGTTATCCAGAATTTGAATGATTGTGACTTT ACTCCAATCTATGATTGGTGCCAAAGTGAAAAGGAGAAGAAGAGACAGATGAGTTCGGAAGAGAAGAAGGCTCAGAAGGAGGAGAGAGCTAAACTAGAAG AGAAATACATGTGGGCTATTGTTGATGGTGTAAAAGAGAAGGTTGGAAACTTTAGAGTTGAACCACCAGGGTTGTTCCGAGGCCGTGGAGAGCATCCTAA GATGGGAAAATTGAAACGCCGGATCCGTCCAAATGATATCGTAATCAACATTGGAAAGGATGCACCAATTCCTGAATGTCCTATTCCTGGAGAAAGTTGG AAGGATATAAGACATGACAACACAGTTACATGGTTAGCCTTCTGGAATGACCCAATCAATCCAAAATTATTCAAATACGTGTTTCTGGCAGCTAGTAGTT CATTGAAGGGGCAAAGTGACAAGGAAAAGTATGAGAAAGCTAGGATGTTGAAGGATTATATAGGGAACATTCGGGCTGCATACACAAGAGATTTTACTTG CAGAGATATTACTAAACAGCAAATAGCTGTTGCTACTTATCTTATCGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACA GTAGGTTGTTGCACATTAAAAATAGAGAATGTGACACCAGAAGCCCCAAACAAGCTACAGTTTAACTTCCTTGGTAAAGATTCAATCAAGTATGAAAATA CAGTCGAGGTGGAACTTCCTGTTTATAATGCAATTTTAAAGTTCCAAAAAGATAAACAACCTGGTGATGATCTTTTCGACATGTTGGATACAAGTAAACT AAATGCTCATCTGAAGGAACTCATGCCCGGCCTAACAGCAAAAGTTTTTCGTACATTCAATGCATCTATCACGTTGGACGATATGTTGAATAAAGATACT AAAGATGGAGATGTTGCGGAAAAGATTGTTGTTTATAATCATGCAAACAAACAGGTTGCAATCATTTGTAATCATCAACGTAGTGTTTCAAAATCTCACT CTGCACAAATGTCGAAATTGACTGAGAAGATCGATGAACTTCAGGCTGTTTTGAAGGAGCTAAAAGTTGATTTGGACAGAGCAAGGAAAGGAAAGCCCCC TCTAAAGAGTTCAGATGGAAAGGCAAAAAGGAACTTAACTCCCGAAGCGTTAGAGAAAAAGGTAGCTCAAACCAATACAAAAATTGAGAAAATGCAACGA GACATGATGACAAAAGAAGATCTAAAAACTGTGGCATTAGGCACGTCGAAGATAAACTACCTCGACCCCAGAATCACAGTGGCTTGGTGCAAGCGGCACG AGGTTCCTATTGAAAAGATTTT
• Tissue: pods
• Gene name: LI_gene_183766;
• Additional information: details;

Expression of Ll_transcript_518791

FPKM

• PAB: 0.9
• PNAB: 3
• PS1: 3.7
• PS2: 4.2
• PS3: 3.8
• PW1: 3.6
• PW2: 3.7
• PW3: 2.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_518791

• Blastp: DNA topoisomerase 1 alpha from Arabidopsis with 59.78% of identity
• Blastx: DNA topoisomerase 1 beta from Arabidopsis with 61.09% of identity
• Eggnog: Dna topoisomerase(COG3569)
• Kegg: Link to kegg annotations (AT5G55300)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019431101.1)
• Pfam: Eukaryotic DNA topoisomerase I, DNA binding fragment (PF02919.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;