Ll_transcript_518801

• Id Trinity: TRINITY_DN51285_c1_g1_i18
• Name Transcript: Ll_transcript_518801
• Sequence: GTTAATTTGTTTTTTTTGTTCCCAAATTCCTTTCATCAGTTTCATTCTCACACACCGTCAACTCTTTCTTCTGTTTCACAGCTACCTTGCCACCTATCTT CTTTATTCTCTCACATTCATTTTGTTGAATAATGGCTGTTGAGGCTTCTGATAAACCACATGTATCGGATGGTTTCGATGACGATGATGATGGGCCGATT ATTTTCAGAAGGAACACAACATCTAAGAGAAATGTCGAAGGTTCTAACGCGGCTACTTCAAATGCTCGAGGTTCTAGTTTACAGAAGGGTACGATTATTG CATCACGTATGATGTTACCAAAGGAATCTTCTGGAGGCTTCTCAAGAGCATCAACATCACATGTCAAGGCCTATCTTGTGAACTCGGCTATAGCAAATTC AAAATCACCTTTAGGTGGTAAACCAAAGCCTTCTCTGGAACGGAAAATTCCGAGTGGTGTCAAGGTGGAAAATAGTTCTGTCATGCGTCTTACGAAGGAC AATTGTGAAGATTCTGAGGATGAGTTGGATAATAAACCATTAAGTGCTAGGTTGAAGGTGAACTCTAACAATGCTAACAAAGCAACCCTTGCTGTTGTGA AGAGATCTTCTGAAGACTCCGATAATGTTGATGACGATGATGATATCCCTTTGTCAGCTAGGTTGAAGAATTATAATGTTGGAACATCTACTAGTAGTAA GTATGACAACTCTGATCGGAAAAAACCAATTTCGAAAGTTCAGAAAGGACCACAAGATGGTTCCAATGCTAGTATTAAACAGGAAAGGCCATCTACTTTG TTAGTTAAGAGGCCACTGGATAATACTGATTCCTTGCACTCGGCAATTAAGAAGCCAAAATTCTCAGTTCTAGATGCATCAATCAGCGATAAGAAAGTAC CAATGAAACCTGAGCCAAAGGTAGAGGAGGAGGAGGATGATGATGATGATATTCCTTTTTCCCAAAGAATGAAGAAGTTGTCGGAATCATCTTCTTTGAA GAAGTCGAAGAATGTTATTAAAGTTAATAAGGCTGGTTTATCTTTTAAGAAACAAGCCACAACGTTCAAAAAGTTTTCCAATAACTCAGAATATTCCAAA TCTACTAAACTTCTTCCTAGCTCTGGTGATGGTCAGAAAAAATGGACTACTCTGGTTCACAATGGTGTCATTTTTCCGCCTCCATATCAGCCCCATGGGG TAAAGATGCTCTATAAGGGGAAACCGGTTGATTTGACTCCTGATCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGATACAGATTACATGCAGAA AGATAAGTTCAAAGAGAATTTCTGGAATGACTGGCGTAAGTTGCTAGGGAGAAATCATGTAATTCACAACTTGAAAGATTGTGACTTCACTCCAATCTAT GATTGGCACCAAAGTGAAAAGGAAAAGAAGAAACAAATTACTACAGAAGAGAAGAAGGCCCTGAAGGAGGAGAAAATGAAACAGGAGGAGAAATTCATGT GGGCTATTGTTGACGGTGTTAAAGAGAAGGTTGGAAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGTGGAGAGCATCCTAAGATGGGAAAATT GAAACGCCGGATCCGTCCAAATGATATCGTAATCAACATTGGAAAGGATGCACCAATTCCTGAATGTCCTATTCCTGGAGAAAGTTGGAAGGATATAAGA CATGACAACACAGTTACATGGTTAGCCTTCTGGAATGACCCAATCAATCCAAAATTATTCAAATACGTGTTTCTGGCAGCTAGTAGTTCATTGAAGGGGC AAAGTGACAAGGAAAAGTATGAGAAAGCTAGGATGTTGAAGGATTATATAGGGAACATTCGGGCTGCATACACAAGAGATTTTACTTGCAGAGATATTAC TAAACAGCAAATAGCTGTTGCTACTTATCTTATCGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACAGTAGGTTGTTGC ACATTAAAAATAGAGAATGTGACACCAGAAGCCCCAAACAAGCTACAGTTTAACTTCCTTGGTAAAGATTCAATCAAGTATGAAAATACAGTCGAGGTGG AACTTCCTGTTTATAATGCAATTTTAAAGTTCCAAAAAGA
• Tissue: pods
• Gene name: LI_gene_183766;
• Additional information: details;

Expression of Ll_transcript_518801

FPKM

• PAB: 0.4
• PNAB: 1.3
• PS1: 0
• PS2: 0.1
• PS3: 0
• PW1: 0.4
• PW2: 0.8
• PW3: 0.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_518801

• Blastp: DNA topoisomerase 1 alpha from Arabidopsis with 55.43% of identity
• Blastx: DNA topoisomerase 1 beta from Arabidopsis with 78.34% of identity
• Eggnog: Dna topoisomerase(COG3569)
• Kegg: Link to kegg annotations (AT5G55300)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019414096.1)
• Pfam: Eukaryotic DNA topoisomerase I, DNA binding fragment (PF02919.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;