| Id Trinity | TRINITY_DN51285_c1_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_518784 |
| Sequence | GTTAATTTGTTTTTTTTGTTCCCAAATTCCTTTCATCAGTTTCATTCTCACACACCGTCAACTCTTTCTTCTGTTTCACAGCTACCTTGCCACCTATCTT CTTTATTCTCTCACATTCATTTTGTTGAATAATGGCTGTTGAGGCTTCTGATAAACCACATGTATCGGATGGTTTCGATGACGATGATGATGGGCCGATT ATTTTCAGAAGGAACACAACATCTAAGAGAAATGTCGAAGGTTCTAACGCGGCTACTTCAAATGCTCGAGGTTCTAGTTTACAGAAGGGTACGATTATTG CATCACGTATGATGTTACCAAAGGAATCTTCTGGAGGCTTCTCAAGAGCATCAACATCACATGTCAAGGCCTATCTTGTGAACTCGGCTATAGCAAATTC AAAATCACCTTTAGGTGGTAAACCAAAGCCTTCTCTGGAACGGAAAATTCCGAGTGGTGTCAAGGTGGAAAATAGTTCTGTCATGCGTCTTACGAAGGAC AATTGTGAAGATTCTGAGGATGAGTTGGATAATAAACCATTAAGTGCTAGGTTGAAGGTGAACTCTAACAATGCTAACAAAGCAACCCTTGCTGTTGTGA AGAGATCTTCTGAAGACTCCGATAATGTTGATGACGATGATGATATCCCTTTGTCAGCTAGGTTGAAGAATTATAATGTTGGAACATCTACTAGTAGTAA GTATGACAACTCTGATCGGAAAAAACCAATTTCGAAAGTTCAGAAAGGACCACAAGATGGTTCCAATGCTAGTATTAAACAGGAAAGGCCATCTACTTTG TTAGTTAAGAGGCCACTGGATAATACTGATTCCTTGCACTCGGCAATTAAGAAGCCAAAATTCTCAGTTCTAGATGCATCAATCAGCGATAAGAAAGTAC CAATGAAACCTGAGCCAAAGGTAGAGGAGGAGGAGGATGATGATGATGATATTCCTTTTTCCCAAAGAATGAAGAAGTTGTCGGAATCATCTTCTTTGAA GAAGTCGAAGAATGTTATTAAAGTTAATAAGGCTGGTTTATCTTTTAAGAAACAAGCCACAACGTTCAAAAAGTTTTCCAATAACTCAGAATATTCCAAA TCTACTAAACTTCTTCCTAGCTCTGGTGATGGTCAGAAAAAATGGACTACTCTGGTTCACAATGGTGTCATTTTTCCGCCTCCATATCAGCCCCATGGGG TAAAGATGCTCTATAAGGGGAAACCGGTTGATTTGACTCCTGATCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGATACAGATTACATGCAGAA AGATAAGTTCAAAGAGAATTTCTGGAATGACTGGCGTAAGTTGCTAGGGAGAAATCATGTAATTCACAACTTGAAAGATTGTGACTTCACTCCAATCTAT GATTGGCACCAAAGTGAAAAGGAAAAGAAGAAACAAATTACTACAGAAGAGAAGAAGGCCCTGAAGGAGGAGAAAATGAAACAGGAGGAGAAATTCATGT GGGCTATTGTTGACGGTGTTAAAGAGAAGGTTGGAAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGTGGAGAGCATCCTAAGATGGGAAAACT GAAAAAACGCATCTGTCCAAATGATATCACAATCAACATTGGAAAGGATGCACCAATTCCTAACTGTCCTATTCCTGGAGAAAGTTGGAAGGATATAAGA CATGACAACACAGTTACTTGGTTAGCCTTCTGGAGTGACCCAATCAATCCAAAATTATTCAAATATGTGTTTCTGGCAGCTAGTAGTTCATTGAAGGGGC AAAGTGACAAGGAAAAGTATGAGAAAGCTAGGATGTTGAAGGTCTTGATTATTGGTGCAGGGTTATATAGGGAACATTCGGGCTGCATACACAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_183766; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_518784
| Blastp | DNA topoisomerase 1 alpha from Arabidopsis with 52.9% of identity |
|---|---|
| Blastx | DNA topoisomerase 1 beta from Arabidopsis with 80.25% of identity |
| Eggnog | Dna topoisomerase(COG3569) |
| Kegg | Link to kegg annotations (AT5G55300) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019414096.1) |
| Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment (PF02919.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |