Ll_transcript_518789

• Id Trinity: TRINITY_DN51285_c1_g1_i9
• Name Transcript: Ll_transcript_518789
• Sequence: GTTAATTTGTTTTTTTTGTTCCCAAATTCCTTTCATCAGTTTCATTCTCACACACCGTCAACTCTTTCTTCTGTTTCACAGCTACCTTGCCACCTATCTT CTTTATTCTCTCACATTCATTTTGTTGAATAATGGCTGTTGAGGCTTCTGATAAACCACATGTATCGGATGGTTTCGATGACGATGATGATGGGCCGATT ATTTTCAGAAGGAACACAACATCTAAGAGAAATGTCGAAGGTTCTAACGCGGCTACTTCAAATGCTCGAGGTTCTAGTTTACAGAAGGGTACGATTATTG CATCACGTATGATGTTACCAAAGGAATCTTCTGGAGGCTTCTCAAGAGCATCAACATCACATGTCAAGGCCTATCTTGTGAACTCGGCTATAGCAAATTC AAAATCACCTTTAGGTGGTAAACCAAAGCCTTCTCTGGAACGGAAAATTCCGAGTGGTGTCAAGGTGGAAAATAGTTCTGTCATGCGTCTTACGAAGGAC AATTGTGAAGATTCTGAGGATGAGTTGGATAATAAACCATTAAGTGCTAGGTTGAAGGTGAACTCTAACAATGCTAACAAAGCAACCCTTGCTGTTGTGA AGAGATCTTCTGAAGACTCCGATAATGTTGATGACGATGATGATATCCCTTTGTCAGCTAGGTTGAAGAATTATAATGTTGGAACATCTACTAGTAGTAA GTATGACAACTCTGATCGGAAAAAACCAATTTCGAAAGTTCAGAAAGGACCACAAGATGGTTCCAATGCTAGTATTAAACAGGAAAGGCCATCTACTTTG TTAGTTAAGAGGCCACTGGATAATACTGATTCCTTGCACTCGGCAATTAAGAAGCCAAAATTCTCAGTTCTAGATGCATCAATCAGCGATAAGAAAGTAC CAATGAAACCTGAGCCAAAGGTAGAGGAGGAGGAGGATGATGATGATGATATTCCTTTTTCCCAAAGAATGAAGAAGTTGTCGGAATCATCTTCTTTGAA GAAGTCGAAGAATGTTATTAAAGTTAATAAGGCTGGTTTATCTTTTAAGAAACAAGCCACAACGTTCAAAAAGTTTTCCAATAACTCAGAATATTCCAAA TCTACTAAACTTCTTCCTAGCTCTGGTGATGGTCAGAAAAAATGGACTACTCTGGTTCACAATGGTGTCATTTTTCCGCCTCCATATCAGCCCCATGGGG TAAAGATGCTCTATAAGGGGAAACCGGTTGATTTGACTCCTGATCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGATACAGATTACATGCAGAA AGATAAGTTCAAAGAGAATTTCTGGAATGACTGGCGTAAGTTGCTAGGGAGAAATCATGTAATTCACAACTTGAAAGATTGTGACTTCACTCCAATCTAT GATTGGCACCAAAGTGAAAAGGAAAAGAAGAAACAAATTACTACAGAAGAGAAGAAGGCCCTGAAGGAGGAGAAAATGAAACAGGAGGAGAAATTCATGT GGGCTATTGTTGACGGTGTTAAAGAGAAGGTTGGAAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGTGGAGAGCATCCCAAGATGGGAAAGTT GAAACGACGCATTTGTCCAAGGGATATCGTCATTAATATTGGAAAGGATGCCCCAGTTCCTGAATGTCCTATTCCTGGTGAAAGATGGAAGGAGATAAGA CATGACAATACAGTTACATGGTTAGCGTACTGGAGTGACCCTATCAATCCAAAGTTATTCAAATATGTGTTTCTGGCAGCTAGTAGTTCCTTGAAGGGAC AAAGCGACAAGGAAAAGTACGAGAAAGCTAGGATGTTGAAGGATTATATAGAGAACATTAGGGCTGCATACACAAAAGATTTTACAAATAAAGATATCAC AAAGCAGCAGATAGCTGTTGCTACGTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGTTGC ACATTAAAAGTAGAAAATGTAACAAGAGAAGCCCCCAACAAGTTGAAGTTCAACTTCCTTGGTAAAGATTCAATCAAGTATGAAAATACAGTTGAGGTCG AGCTTCCTGTTTATAATGCAATTTTAAAGTTCCAAAAAGAAAAAGGCCCTGGCGATGATCTTTTTGACATGCTGGATACAAGTAAATTAAATGCCCATCT GAAGGAACTCATGCCCGGACTAACAGCAAAAGTCTTCCGTACATTTAATGCATCTATCACATTGGATGACATGGTAAAACAGATTTGAAATGAAAATCCT GAAAGTCAGTTTTTTTGTTTTGTGGAGGGGGGATAAGTAGTATATATTCTCAACAACATCACTCATTTGTTTCTGCACAATTATATTTACTTCTGTATCT GTGCAGGTTCATCTTGTAACTTTTGTATACATCCATATACAATCCTCTGCACAATTATAGAAAACGCAAACCACTCTAAGAATTTCACTTCATGAATTTT TAATGCAACCTGGAAATTACATATTGACATACCCAACCCAAACATATATTTACTGTCTTATATATTTATTTTGATTTCTTGTAGCATGTTATAGATTGTA GACTTGTTTATTTAATTCTCCTCGGATTATATGATAACAGCTGAATAAGGGAACTAAAGGTGGAGATGTTGGAGAAAAGATTGTTGTTTATCAGCATGCA AACAAACAGGTTGCAATCATTTGTAATCATCAACGTAGTGTTTCAAAATCTCACAGTGCACAAATGTCGAAGTTAAATGAAAAGATTGATGAACTTAAGG CTGTTCTAAAGGAGCTGAAAACAGATTTGGACAGGGCAAAGAAGGGAAAGTCCCCTTTAAAGAGTTCAGATGGAAAGACAAAA
• Tissue: pods
• Gene name: LI_gene_183766;
• Additional information: details;

Expression of Ll_transcript_518789

FPKM

• PAB: 0.2
• PNAB: 1.4
• PS1: 0.3
• PS2: 1.7
• PS3: 1.8
• PW1: 1.2
• PW2: 1
• PW3: 1.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_518789

• Blastp: DNA topoisomerase 1 alpha from Arabidopsis with 57.66% of identity
• Blastx: DNA topoisomerase 1 beta from Arabidopsis with 79.17% of identity
• Eggnog: Dna topoisomerase(COG3569)
• Kegg: Link to kegg annotations (AT5G55300)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019414096.1)
• Pfam: Eukaryotic DNA topoisomerase I, DNA binding fragment (PF02919.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;