| Id Trinity | TRINITY_DN51294_c3_g1_i18 |
|---|---|
| Name Transcript | Ll_transcript_519170 |
| Sequence | CATATTACCATGACACTACACTGCTTCAATTTCCCTTTTTTTAAATAAATAAATAAAAACTTCGAATCCTTTTTACACAATAACGAAAATGATTAAAAAA ATCACGACGAAGCGTGTACCTTAAAGCACGATGGATATTTATCGATGAAGGAGAAGAGAACAAAAATGGATTTGAAGATTTGGTAGTGAAGCTTTTGGAA CGATTAGCGAGGGTCCTCGATGCTACCCTCGCTATTGATTTACACACCGTAGAAGAAGCCATTGTTCTAACTCACATTTCCTTCAACCCCTTAAACCCTA ACATTTCACAATTGGGCCTGGCCCATTTCAAAAACCCAAAATAAACCGGTTTATAAATCCGACCCGGTTTATAACGAACTGAGACGAGTGAAGTGAAAAA CCTACTGCATCGTTGAGCAGTGGCGAAAGAGAAAAGGGGAAAATGGCAGAAGAAGCAATTCTAGGTTATTTGGAACACAACGATGAGATTAAAGATTCAG GAGAATTCGCAGGTGAACGTAACATCGATCATAGTGAGATCGTGAATGTGATAAAGAGTCTCTATGGTTTTCGATACGTGGATGTTGAGGATATTAAAAG GGAATCATGGGTTTTAACCGATGAGGGGAATATATATGCTGAATCAGGGTCACCAGAAGTGCAATTGTTTTTGGCGGTACCAGAAGAGGGTATTGTGAAA GATGAACTTTTGAAGAAAGTGGGTCCTTCTCTCTTCAAGATTGGTTGTGCCCAAGCTGCTAAGAACAAATGGCTTGATTTGGGTAAACAACTTATCACTA GAAAGCTTCAACATGTTGATGACAAGGTTAAACACCTGCTTCTTCAAATACAACAAGGACAGGGCATTGGTTCAGATGATATCAAGGCACTCAAAGCACG AAAGCTTATTGTTCCACAGTAATAATAATTTGACTCGGTTGTGCTAATGAGTTTAAAGATATACTTGAATGTCCTGTCAATGACATGACCTTTCTTTTAA TATTGGGAAAATTCTTGATATTTCATGATACACAGGACGTGGAAGGGTTACTCGGTGAAAAAGGGTCCTAACTATGCACCAAAAAGAAAGCAGGTTGTCA CTGATTTAACTCGGGATAATTTTCAGAGTGGTGAGTGGAAGGAGTTAGAGTTCAAAGAGTACAATTACAGTGCTAAAGGTCAGCCTCTTGAGGGTGGTCA TCTTCATCCACTTCTGAAGGTACGGTCTCAACTGAAGCAGATTTTCCTCTGCATGGGGTTTGAGGAGATGCCGACAAATAATTTCGTGGAGAGTAGCTTC TGGAATTTTGATGCCTTGTTCCAGCCCCAACAACACCCTGCTCGTGATTCCCATGACACTTTCTTTTTGGAAACTCCGTCAACAACGAACATTCTCCCAG AAGATTATGTTCAGAGGGTGAAGCAAGTGCACGAATCTGGTGGTTATGGATCTAGGGGATATGCATACGACTGGAAAAGAGAGGAAGCAAATAAAAACCT TCTGCGAACTCACACAACTGCTGTTTCCTCCAGAATGCTTTACCAGCTAGCAAAGAAACCTTTTTCTCCAAAGAAATATTTCTCTATAGATCGTGTTTTC AGAAATGAAGCAGTTGATCGAACTCATCTTGCTGAGTTCCACCAGATAGAAGGCCTTGTGTGTGATCGAGGACTCACTCTCTGTGACTTAATCGGAGTAT TGCATGATTTCTTCTCACGCATGGGCATGACCAAGTTGAAGTTCAAACCAGCATATAACCCTTACACTGAACCTAGCATGGAGATTTTCAGTTATCATGA AGGCTTTAAAAAATGGGTAGAGGTTGTAAACTCTGGCATGTTCAGACCTGAAATGTTGCAGCCAATGGGACTTCCTGAAGATGTCCAAGTTGTTGCATGG GGTCTTTCCCTTGAAGGGCAAATGATGATACAAATATGCTTGAGGATCATCTCGAGTCAGCAACATTTAGGATTTTTGTTATATATTTTGTTTTTAAAGT GTCATATGATACTAATTTTAGTTTTTTTTTAGATTTTATGGTGTATTTTAATTTATAATAAATGATGGATTATAACTCTTTCAACTATTTATGTTATCTT GGTTATTTGTAATGAAATTTTATTATTGTTAAGAATAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_183835; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_519170
| Blastp | Phenylalanine--tRNA ligase alpha subunit, cytoplasmic from Arabidopsis with 82.78% of identity |
|---|---|
| Blastx | Phenylalanine--tRNA ligase alpha subunit, cytoplasmic from Arabidopsis with 72.03% of identity |
| Eggnog | phenylalanyL-tRNA synthetase, alpha subunit(COG0016) |
| Kegg | Link to kegg annotations (AT4G39280) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448494.1) |
| Pfam | tRNA synthetases class II core domain (F) (PF01409.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |