Ll_transcript_288711

• Id Trinity: TRINITY_DN51300_c1_g1_i15
• Name Transcript: Ll_transcript_288711
• Sequence: AAAAAACCTTTAAATACAGTTGAATCCTCAACAATCCCAAAAAACCAAACCATTGAAACTAAATTTCTATCTATCAATCATTCTCTACTACTTTTCACTT CTCTGGGACCAATCATCATCACGTTCTTGCTCTTCCACACTTCTCTTTTCTCTAAAGATTCCTCATTCTCTCAAAACACTGCATGTAACAACACACCCTC CTTTTTCTTTTCTTTTCACTCTTTACATTATAACAAAGAGCTTTCTCTTCAATTTGTTGCATACCCATTTCGTTTTAGGTGCCAAAGGAACAAGCTTTTG CATCAGAGGACCCTCTCTTACCTTCAATTTTAGGGTTTTCTGACCTTTTTTACCCTTGTTTAGGCAGAGAACGCCAGAACAGTGATACAATGAATAAATC TTCGGATCCTTCATCTTTCGGCTCTTCTAAGATTCGATCTATAATAAATATACCTAGAGAAGCTGGACAGGCTGCATGGGATGTTTTATCTGGATCTGAT TCCTACCATACCTCATATGATGCTAGCCTCTTTTCTAGCTCATTACCTGTTCTTCCGCATGGGAAATTGAACTTGAATGGCACGGAAAACAGTTATCAAT CAATTGATGACATCCCATCTGGCTTTAAAAAGCTCCATGAAGATGTTGAGGACAATGATTCACCCGAAGATGTTGATAGTCATGCAATTGGAACCATGCT TCCTGATGATGAGGAGGAACTTTTAGCTGGTATAATGGATGATTTTGACCTAAGAGGTTTGCCTTGTTCCCTCGAGGACTTGGAAGAGTATGATCTTTTT GGTAGTGGTGGAGGCATGGAGCTAGAAACTGATCCACAGGATAGTCTCAGTGTGGGTATGTCTAAGTTAAGCTTCTCTGATAGCACTGCTGGCACTGGTT TGCCCCTTTATTCTTTTCCTAATGGTGTGGGAGCTGTTGCCGGAGAACATCCGTTGGGAGAGCATCCTTCCCGAACATTATTTATTCGAAATATTAACAG TAATGTGGAGGATTCTGAGCTGAAAGCTCTTTTTGAGCAATATGGCCATATTAGAACCCTCTATACTGCCTGTAAACATCGGGGGTTTGTAATGATATCA TATTATGACATCCGTGCTGCTCGAACAGCCATGCGTGCATTACAGAACAAACCTCTCCGGCGCAGGAAACTTGACATTCACTTCTCAATACCAAAGGACA ATCCATCAGACAAGGATATCAACCAAGGAACCTTGGTGATTTTCAATTTGGATCCTTCTGTTTCAAATGAAGATCTCCGTCATATATTTGGAGCATATGG AGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGTCACCATAAGTTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCGCTTAAGTCGTTGAAT AGGAGTGACATAGCTGGTAAATGCATAAAGCTGGAACCAAGTCGTCCTGGAGGAGCTCGTCGAACTTTGATGCTCCAACTTAATCAAGAGCTTGATCAAG ATGAATATCGGAGTTTCCGATACCAAGTGGGTTCTCCTGTGGCAAACTCTCCACCAAGTAAGTGGTTGCAGTTTAGCAGTCCTGTCGAGCAGAATTCAAT GCAAACTATGAATCATTCTCCTGGTTCAAAGATCATAAGCCCAACAACAGGCAATCATTTACCAGGATTAGCTTCAATTTTGCAACCTCAGGTATCAAAC AATGTGAAGGGTGCAGCTATTAGCAAGGACTTGAGAACTAGTAGTGATGGAGAGAGCATATTTACCAGTATGAATTCAATACATGATGCTTCTTTTCAGT CGCATTCACTTCCAGAGCCAAAGTTCAGACAACATTTTGGACCTTTATCCTCTTTTGGTCAATCAACATCAAATGGATCATCAATTGAAACCTTGTCTGG GCCACAGTTTCTATGGGGAAGTCCAACCCTCTACTCCGAGCATAACAAGCCTTCAGCTTGGCCAAGACCATCTGTGGGGCATCCATTTACATCAAATGGA AAGAGCCATGCCTTCCCATACTCAAGTCAGAATAATTCCTTTGTTGGTTCATCCCAGCATCTTAACCATCATCATGTTGGCTCTGCTCCATCAGGTTTGC CTTTTCAGAGACACTTCGGTTTCCGTCCCGAATCACCTAAAACTTCATTCATGAATAATGTTAGTTATGGAGGCATGAGTCTGGGCCACAATGATGGAAA TTACATGCTTAATGTGGCTGGGTCTGTTAACACTGGCATTAATATACCAAGAAATATGCCTGATAATGGTTCACCGAACTTCAGGATGAGATCTTCTCCT AGGCTTAACCCTGTGTTTTTGGGTAGTGGTCCTTACCCAGGACTGCTGCCTACCACTATGGATAGTTTGACTGACCGTGCTCGTAGTAGACGGATAGAGA ACAATGGAAGCCAATTTCAGCTTGACTTGGAGAAGATTAAAAATGGCGAAGAGACAAGGACCACATTAATGATAAAGAATATCCCTAATAAATACACCTC AAAAATGTTATTAGCTGCCATTGATGAAAACCACAAGGGTACCTATGATTTTCTATATCTGCCAATTGACTTCAAGAACAAATGCAACGTGGGTTATGCA TTTATCAATATGCTTTCACCTTTGCTTATTGTTCCATTCTATGAGACATTCAGTGGGAAGAGATGGGAGAAGTTTAACAGTGAAAAAGTTGCTTCTTTGG CATATGCTCGAATCCAAGGAATGACTGCCCTTGTGAGCCACTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGCCCTATTCTCTTCCACGC AGAGGGTCCTGAAGCTGGTGATCAGATCATTCAAGAGCATCTTCCCTCCGACAATCTAAATGTTCATGCACATAGGCCAAAGGAGTTACATTCAAGTGAT TTTCCGCGCACACCTCCGAATGATGGCCTTCCTGTGAGCTTGGAGACATATTAACATTATACAAGGTGCAGAGTTGCATAGGACAAATGTGGTTGTTGCT GTTTATGTGAACTTTTGCATGTATGTCTTGGTTAATACCTAAGGTGCTGCATATATTTAGGATGTAGATTTTTCCACAAAGCTTCAGAAGTTGGAGCATT TTGATGCACAGTTACCTGATCTGATTATGTGTATTCAAAGTGGTAGCAAAGGCTGAAAGGGCTGAGCAAAGTTTCCTTTCAGGGTCTCCACTTTTGCTCA TTTGTTATTGAGTAATTTTGTTTGTTGTGAAAATGTTTATATGGGTAGTTTTGTTAGGTTTGAGATTAGTGTTTGTAAGTTATCATGGGGAAATAAAAAC ACTTGTTCCTATTTTGCTCTTTTGTATACCAAATGCTTATTTAAATCTGGTGTACAAAGTTAATCTCATTGAAAATTGAGTTTATTTTATGTTTAATTGC TTAAAACAATATAGAATGGTACCGAC
• Tissue: pods
• Gene name: LI_gene_183885;
• Additional information: details;

Expression of Ll_transcript_288711

FPKM

• PAB: 5.5
• PNAB: 3
• PS1: 3.9
• PS2: 0.6
• PS3: 1.4
• PW1: 2.2
• PW2: 3.6
• PW3: 2.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_288711

• Blastp: Protein MEI2-like 2 from Oryza sativa with 58.38% of identity
• Blastx: Protein MEI2-like 2 from Oryza sativa with 58.38% of identity
• Eggnog: Rna-binding protein(ENOG4111R9F)
• Kegg: Link to kegg annotations (4330544)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019417298.1)
• Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF13893.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;