| Id Trinity | TRINITY_DN51300_c1_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_288694 |
| Sequence | AAAGGATCCCGATCAGTATTCTCATGGATATTAGTGAACATGAGATCCTGATATCTGATAGCATTGGTTCTACAAAGTTGGATTTATGTCCAATTTAACT TTTCACCACGAAACCTTAGCTTCATGTTGTTCAGCTGCTACTGAATTTCGGTGGGACCTAGGAATGTTGTGTGGTTGTGTATATATTAGTTCCCCATTTT TGGAGTCGACAAACACAATTTTTTACCTATTGTTGTTTTCACGGAACGTCGTGGGCAATGGTTGGGGCCGGGGTTGGTCGGTTTAGAACAATAAATATCT ATAATGGTTCCCCCTATTTGTTGACAGGGAAAAAATATATAACAAATGAATTTCTTTCTCTAACTATATAATGTGTTATTACTGATTTCTGCAAAAGCTT ACTATTATTGTAGATGCTGATGTAGATGTGGAGTTTTCTTAATTATTACCAATTCTGGTGTAATTAGTAGTTATTCTATATTTTATGATTGCAAGGATGT ATTATTTATCTGATTATAGCAAAACAAGGGTACTCAATATACTATTGTTTTGTGAATGAAGCAGAGAAGGGTGATGCAATGAAGCAGTCTCTTGATCCTT CATCTTTGGGTACTTCCATGTTTCGATCTATAAATATGCCTAAAGAAGCGGGGCCGGCTGCGTGGGGTGTTTTATCTGGATCCGATTCCTACTATGCCTC ATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTTCTTCCACATGAAAAATTGAACTTAAGTGACATGAAAAACAGTTACCAATCATCTGGCTTTAAA AAGCTCCACCAAGATATTCCAGGCAATGATTCACCTGAAGATGTTGACACTAATGCAATTGGAAGTATGCTTCCCGATGACGAGGAGGAACTATTAGCTG GTATAATGGATGATTTTGACCTAAGTGGTTTGCCTGGTTCCCTTGAGGACTTGGAAGAGTATGATCTTTTCGGTAGTGGCGGAGGCATGGAACTAGAAAC TGACCCACAAGAAAGTCTCAGTGTGGGTATGTCTAAGTTAAGCTTCTCTGATAGCACTACTGGCAATGGTTTGCCTCTTAATTCTTTTCCTAATGGTGTG GGAGCTGTTGCCGGAGAACATCCGTTGGGAGAGCATCCATCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTTGAGGATTCCGAGCTGAAAGCTC TTTTTGAGCAATATGGTGATATTAGAACCCTCTTTACTGCCCGTAAACAGCGGGGGTTTGTAATGATATCCTATTATGACATCCGCGCTGCTCGAACAGC CATGCGTGCATTACAAAACAAACCTCTTCGGCGCAGGAAACTTGACATTCACTTCTCAATACCAAAGGACAATCCATCAGACAAGGATATCAACCAAGGA ACCTTGGTAGTTTTCAATTTAGATCCTTCGGTTTCAAATGAAGACCTCCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTC ACAAGAGGCATCATAAGTTTATTGAATTTTATGATGTCAGAGCCGCAGAAGCTGCACTTAAGTCATTGAATAGGAGTGACATAGCTGGTAAACGCATAAA GCTGGAGCCTAGTCGCCCTGGAGGAGCTCGTCGAAAGTGTGTATATTAATAATTTGACAATTGATATTGTTTTGATATTCTGTTTATCTCTGTGGTGAAA ATCATTGTTCTGCATTGTGTGAATATGAAGAAACCGATGAGGCATCTAGAGACCTTTCTGCTGTTAAATAGAGTAGCACAAATGATAATCTCTGGCTTAT CTTTCTCTGGTGCTTTGTGAGACAGATCAAACACTGTCGAAATTATTTGAAATTAATTAATATTGGGATTGCGTTCGAGTAAAACGGCTTTCACCAAATG CTCCATAAAAATTTGTTATTCGAGAGTAGAAAAATGTTATATGGATATACCTCCCTCTGTTTTCTGGCACCATTATTTGATGCAAAAGTATATAATTGAT AATACCTTGCACCTTGTAGTTTGATGCTCCAACTTAATCAAGATCTTGATCAAGATGAATCTCGGAGTTTCCGATATCAAGTGGGTTCTCCTGTGGCAAA CTCTCCACCAGGTAATTGGTTCCAGTTCAGCAGCCCTGTTGAGCAGAATTCAATGCAAACTATGAATAACTCTCCCGGTTCTAGGATCATAGGCCCTACA ACAGGCAACCATTTTTCAGGATTAGCTTCAATTTTGCAACCTCAGGTATCAAACAATGTGAAGGGTGCAGCTATTGGCAAGGACTTAAGAACTAGTAGTC ATGAAGAGCACATATTTACCAGTATGAATTCAACAAACGGTACGACTTTTCAGTCGCATTCACTTCCAGAGCCAAAGTTCAGCCAATACTGTGGACCTTT ATCTTCTTTCGGTCAATCGACATCAAATGGATTGTCAATTGAGACCTTGTCTGGGCCACAGTTTTTATGGGGAAGTCCAACCCTCTACTCAGATCATAGC AAACCTTCAGCTTGGCCAAGACCATCCTTGGGGAATCCATTTACCTCAAATGGAAAGAGTCACGCCTTCCCATATTCGTCGCAGAATAATTCCTTCATTG GTTCATCCCAGCATCATCATGTTGGCTCTGCTCCATCTGGTTTGCCTTTTGAGCGGCGGTTCGGTTTCCTTCCCGAGTCACCTGAAACTTCATTCACGAG TAATGTTGGTTATGGAGGCATGGGTCTAGGGAACAATGATGGAAATTACATGGTTAATATGGGTGGATCTATTAATGCTGGGATTAATATGTCAAGAAAT GTCCCTGATATTGGTTCATCAAACTTCAGAATGAGATCTTCTCCTCGGCTTAACCCTGTGTTTTTGGGTACTGGTCCTTACCCCGGACCGCCACCTGCTA CCTTCGAGAGTTTGACTGACCGTGCTCGTAGTAGATGGATAGATAACAACGGGAGTCAAGTTGATAGCAAGAAGCAATTTCAGCTTGACTTGGATAAGAT TAAAAATGGCGAAGATGCAAGGACTACATTGATGTTAAAGAATATCCCTAATAAATACACCTCGAAAATGTTATTAGCTGCCATCGATGAAAATCACAAG GGTACCTATGATTTTATCTATCTGCCGATTGACTTTAAGAATAAATGCAATGTGGGTTATGCGTTTATCAACATGCTGTCACCTTTGCTTATTATTCCAT TCTATGAGACATTCAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAAAGACCGCCCTTGTAAG CCACTTCCAAAACTCAAGTTTGATGAATGAAGATAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_183885; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_288694
| Blastp | Protein MEI2-like 5 from Arabidopsis with 66.76% of identity |
|---|---|
| Blastx | Protein MEI2-like 3 from Arabidopsis with 74.35% of identity |
| Eggnog | Rna-binding protein(ENOG4111R9F) |
| Kegg | Link to kegg annotations (AT1G29400) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415284.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF13893.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |