| Id Trinity | TRINITY_DN51322_c0_g1_i16 |
|---|---|
| Name Transcript | Ll_transcript_288480 |
| Sequence | CTTCATTTTTAGCATTCTGTACTAAAGAGTATTACGTAGGAACAGTGAATTAAATAAAGGATAAATGGGAATATTGCATTGAAGATCATCATTACCCATA TTTATTTTCTCCACTTTTCATCCTTATTGTTGTGACCATACCATGTTGCATAGGATCAACACCGCAAGGTCTTTTTGTGCTAAGGTTCTCAGAACCAAAC CTCACTCTGCTGCTGCTTTCTCAACTTCCTTGCTCTTTGATGATACTCAGATACAGGTGCCACCAACATGCTAATCTTTTTATTTCCTATATATGATTCA TTATCTGTTCTTAATAATATTTCAGCACAACAGCACCTCACCTGATTCAGTGTTCAAAAGTAGAACTTTGGATACCCCATCTGGGTTTTCTAGAAAGTAG AAAGTACTATTGGTGGGTGGTATAATTGTAGCCTTGTTTGGAATTATTATATCATCAATAGTATAATAAGATTAAACTAGTAATTGAGTAGGAAAAATAT TGTTTTTGAATTTTGATACTTGGCACCCCTTTACTCATGAGTCATTTCTTTTGTTGTGTTTGCTATATGGCTGCCAATTTACAGAAACTAACCTGAAATT TTGGCTGCCTCATATTTTGAAGTGGGTTGAAAATATTGAGACCCCCCTTCTAAAGCCTTATATTTTATAGTGGGCTGGAAATTGCGAAATTGCATATACT AGCTACTTCAAAGGTGGATCCTGTAATGCTTTTAATGATCTAAAGGTTATATTGAATGATACAGTTCAAAGAAAGTGTTTCTCAGTTTGCAACGGAAAAC ATTGCCCCTCATGCTTCAAAAATAGACCACACAAATTATTTTCCAAAGGAGGTTAACCTATGGAAAAGCATGGGAGAATTTAATCTCCATGGGATTACTG CACCAGAGGAATATGGAGGGCTTGGTCTAGGGTACTTGTATCACTGTATAGCAATGGAAGAGATTAGCCGTGCCTCGGGATCTGTTGGTCTTTCCTATGG TGCTCATTCTAACCTGTGTATCAATCAGCTGGTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATACTTGCCAAAGCTTATCTCCGGGGATCATGTGGGA GCTTTGGCAATGAGTGAGCCAAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGATGGGGGCTATGTACTGAATGGGAACAAGA TGTGGTGTACTAATGGTCCAGTTGCTCAAACATTAGTATGTCTCTAAACTTCATAGCATTTTTCCATGCTCATTGTATTCACTGTGTTCATATTTGGTCT GCCTTCAGAAAGTAGAAGGGAAATGTTTCCTCAAATGGTACTTTCATTGAACTATCTGTTCATCTAAAAATGTATCATTTTCATGTTCCATGGACCTCAT TGCTAAATAACAAAGAAAATGATCAAGATCATGTAAAACATTATTACACCATGAACAGGTGAAAAAGGTAAAAAAAACTGTTAAGCATGTTATCATTCTG CTGCGTAAATATTTAATGTGAATCACATATTTCATTGCACACATTTAGCTTCTGATATCCAGAAGAGCTAAGAGGGGCCACTCTTTGCATTTGTTGGCGA ATTTCTTTACCTATGGCTTATATGGGGAAGCTGAACGCCCATTTAGTATACACTAAATCAAAAAATCTAGACATGCTGTTAATTCATATTATATATTTGA TTGTGTTGAATTGAATCAGGTTGTCTATGCAAAAACAAACATAACAGCTGGGTCAAAAGGAATCACCGCATTCATCATAGAGAAGGGAATGCCTGGGTAC ATTAAACTGAACCTTGACATAAAGTTAAATGATCTTGAGTAGACAACAACCTCTATACTTCAACTTAGATAATCCTTAAGCAATACTGTGATCACATGCT ATGGCTAATCTTCTAAGTTTCAACTGAACCTTAATTGTAGCTCAAACAACTGGACAATAAACTGTACCTTGAACCAAATTTTGGTATGTGTTTTCAACTC TAGACTCATGTGGTGGAACTTATTAGGTTCCATAGCAGGAACCTTTCATCATCAATTCGTTCAAATTTGATTTCTTAGTCTGTAGCTCTCAAAAATCCTT CTCTGAAAAGAAAACTTCTTACATGGTTGACATGGTTGGGATCTCTTTTAAATGATAAATCATTTGAATGCAGTGAAAAAATTACATGTTAAGGTTGACA GTCTGACATTTATTTCTGTTTGGCTACAGATTCAGTACTGCCCAGAAATTAGATAAACTCGGGATGCGAGGAAGTGATACATGTGAGCTTGTCTTTGAAA ATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAAGGGAAAGGTCTCGCTAATTGCTTCTGTAGTCTTTATTAATTTTAAAGCAGATTATCTTTGTT ATTAAGTTTAGTCCAGCATCCAAAAGTTTGTTCCAAGACAGTGGTTATTCTTATATGTTCCTGTTGGTAGATCTTATCACCCTCTCTGCCTGTTTCTTTC TTACTAATAATGTAAAATCATTTAAAGAAACCAGAAAAGGTTGTAGTTATATTCTTATCCTTATTACATATGAACTAGAATCTTGTTTCTAGTGGCAGCA TTTTTCTGCCACACAGTACTTATAAATTGTGTAAATTAAAAGAAGCTCTCCTATGAAGTGGACTATTAATTTTCTGTTGCTTTTTTTACATTGTAAATGC TGATAAAAAGCCACTTCTGTTAATTATTTTACATCCAAGTGTCAATAATAGTTCGGCGATACCACTTTGTTTTCTTATCTTTCAGGAGTCTATGTCATGA TGTCTGGGCTAGATCTGGAGAGGCTTGTTTTGGCAGCTGGTCCCTTGGGTATAATGCAGGCATGTCTTGATGTCTCCCTTCCTTATGTTCGACAACGAGA GCAGTTTGGTCGTCCTATTGGAGAGTTCCAGTTTATACAGGGGAAGATTGCTGACATGTATACTTCTTTACAGTCCTCAAGGTAGAAGATTCTAATGTCA TGGTACTCTTCTGTTTTTGAAAATAAGTTTGCATGGCACTAGATAACATCTTTCATTTCAGGGCTTATGTGTATTCTGTAGCTCGGGATTGTGACAATGG AAAAGTTGAACCAAAGGTGCCTCCACTTATCTTTATCTTTTGGTTACTAGAATATTATTAATTTTTTCCTTGAAGATGTAAGCTTCATCATGGGTTCTTT AAATTTATTATTGGCTATTTTCTATTAACTAAACTCCCCACATAAGGAATTAAGGATACACCCCAGTGTTTTAGATGGATGATGATGGCCTAATAAAATT CCGCCATCATGGCATTATAGGCAAATACCGGATGTTATCATGGTGATTTTTTGGTAGCCTAATACACGAGGCTTCCACATAGTGGAGTCTGAGGATGGTA GATGTATGCAAACCTTATTTAGAAGCTGTTTTCAGAATTTAAACTCATAACCTCATGATTACTAAAACAACAATCATTGTGCCAAAAATATACACGTAAA AAATAAATAATAACATAAGCCACATGCCAAGTCATTTGAGGAGCTAATATGGTTAAGAATTTCTTGGAAAGACTAAGCAGATGGTACTTTGAAGAACTAA AATTACTACTGACTCTATTTTTGCCATGTTTTAAGGAGCTTGAACTTAAAGGTAAGATGTTGGGTCACTATACTTCTACTGGTGCTATTTTAGTCTACCC CTCAATACAACAAACTTTCTGCTTTTCATGCTCCCTTTCCTGCTAATTTCAGGATTGTGCTGGAGCTATACTTTGCGCTGCCGAAAGAGCAACACAAGTT GCTTTGCAGGTAAATAATTTGTTTGCATATGTTGTTATAGAGCCAGGGATTCCAAGGGGGCAAGCACCAGTGCTCCCCCATTCATATATTTCGTACAATT AGTTATATAGAGTATTTTTTAAATGTAAAGTACCTTCATATATGCATATATATATATATATATATATATATATATATATATATATA BLAST |
| Tissue | pods |
| Gene name | LI_gene_184058; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_288480
| Blastp | 2-methylacyl-CoA dehydrogenase, mitochondrial from Solanum with 83.65% of identity |
|---|---|
| Blastx | Isovaleryl-CoA dehydrogenase, mitochondrial from Solanum with 88.05% of identity |
| Eggnog | Dehydrogenase(ENOG410XNMY) |
| Kegg | Link to kegg annotations (102589539) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413614.1) |
| Pfam | Acyl-CoA dehydrogenase, N-terminal domain (PF02771.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |