Id Trinity | TRINITY_DN51322_c0_g1_i21 |
---|---|
Name Transcript | Ll_transcript_288485 |
Sequence | CTTCATTTTTAGCATTCTGTACTAAAGAGTATTACGTAGGAACAGTGAATTAAATAAAGGATAAATGGGAATATTGCATTGAAGATCATCATTACCCATA TTTATTTTCTCCACTTTTCATCCTTATTGTTGTGACCATACCATGTTGCATAGGATCAACACCGCAAGGTCTTTTTGTGCTAAGGTTCTCAGAACCAAAC CTCACTCTGCTGCTGCTTTCTCAACTTCCTTGCTCTTCGATGAAACTCAGATACAGGTTCCTCTTAACATGCTAATGTTTTTATTTCCTAGATAGGATTT ATTTCATGTTCTTAGTAATATATAGCACAACACTACCTCACTGTTTGGGTGTTAAAGAATAAAAATTTGGATACCCCATCTGGGTTTTCTAGAAAAGTAC TATTGGGATAACATCTGCTGAAAATACTTGAGCTTATATGATCAAGAAAATAAGAAGATTGAACTATTTGAGTAGGAAAAAGATTGCTTTTGATACTGAA TGTTTAGGCTTTGTATATGGTATATGGCTGGTTATGAATGCTACTAGCATAAGATTGCACGGCATTCTGCCAATTAAAGAAACTAACTTGACATTTTTGG CAGCTTCAAACTCTACAAATTTCAAGTGGGTTGAAAATATTGAGACCCCCTTGAAAGCCTTATCTTTTATAGTGGGTTGAAAATTGCGAGATTTTGTATA CTAGCTTCTTCAAAGGTGAACTATGTCATGCTTTTAATGATTTCAAGGTTATAATACATTGAATGATACAGTTCAAAGAAAGTGTCTCTCAGTTTGCATC AGAAAACATTGCCCCTCATGCTTCAAAAATAGACCACACAAATTACTTTCCAAAGGAGATTAACCTATGGAAAAGCATGGGAGAATTTAATCTCCATGGG ATTACTGCACCAGAGGAATATGGAGGGCTTGGTCTAGGGTACTTGTATCACTGTATAGCAATGGAAGAGATAAGCCGTGCTTCAGGATCCGTTGGTCTTT CATACGGTGCTCATTCAAACCTGTGTATCAATCAGCTGGTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATACTTGCCGAAGGTTCTAGTTCTGCCTAT CTTGATATTGTTCATTATCAGTAAAATACATGCTGCCTTTCCCTATTGCCGACTCAGTTAGCCAACACTGCTCATAGTTGATCTTTGCTTTCCATCCATC TCTTGTGATCACAAGTAGCCCTTCTCAAATTTTCTGTCTATTTATAGGCTAAGCCTTTTTGTTTTTATTCAATCTTGAAGCTTATCTCTGGTGATCACGT GGGAGCTTTAGCAATGAGTGAGCCCAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAGGCTGATTGTGTGGATGGAGGCTATGTACTTAACGGGAAC AAGATGTGGTGTACTAACGGCCCCGTTGCTCAAACATTAGTATGTCTTTATTTAAACTTCATAGCATTTCCATGCCCATTGCCAGGGACAGATCTAGGAA AGGATAGAGGGACGATCGGAGAATCCAACTTTTTTATATCTTGATGAATGTAATAGTCTACCTCTATAGTGTGAAATGTAGAACAATAATAGAACTGAAG AAGGAAAGTAAAAGCATTTACATACCTAATTAAATAAGTAAACTATACAATGAAAAAAAAGTGGAAGAGATGAAAGACTAAATCACTTGTTCAACCTCTT CTTTGCATTTGTTGGCTAATAATTTCTTTACCTATGGCTTGTATGGGGGATCTGAATGCCAATTTAGTATGAAACTAGATCATAGTATCTAGGCATATGC TGTGAATGCATATCGTATATTTGATTGTGTGGATTGAATCAGGTTGTCTATGCAAAAACAAACATAACAGCTGGGTCAAAAGGAATCACCGCATTCATCA TAGAGAAGGGAATGCCTGGGTACATTAAACTGAACCTTGACATAAAGTTAAATGATCTTGAGTAGACAACAACCTCTATACTTCAACTTAGATAATCCTT AAGCAATACTGTGATCACATGCTATGGCTAATCTTCTAAGTTTCAACTGAACCTTAATTGTAGCTCAAACAACTGGACAATAAACTGTACCTTGAACCAA ATTTTGGTATGTGTTTTCAACTCTAGACTCATGTGGTGGAACTTATTAGGTTCCATAGCAGGAACCTTTCATCATCAATTCGTTCAAATTTGATTTCTTA GTCTGTAGCTCTCAAAAATCCTTCTCTGAAAAGAAAACTTCTTACATGGTTGACATGGTTGGGATCTCTTTTAAATGATAAATCATTTGAATGCAGTGAA AAAATTACATGTTAAGGTTGACAGTCTGACATTTATTTCTGTTTGGCTACAGATTCAGTACTGCCCAGAAATTAGATAAACTCGGGATGCGAGGAAGTGA TACATGTGAGCTTGTCTTTGAAAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAAGGGAAAGGTCTCGCTAATTGCTTCTGTAGTCTTTATTAA TTTTAAAGCAGATTATCTTTGTTATTAAGTTTAGTCCAGCATCCAAAAGTTTGTTCCAAGACAGTGGTTATTCTTATATGTTCCTGTTGGTAGATCTTAT CACCCTCTCTGCCTGTTTCTTTCTTACTAATAATGTAAAATCATTTAAAGAAACCAGAAAAGGTTGTAGTTATATTCTTATCCTTATTACATATGAACTA GAATCTTGTTTCTAGTGGCAGCATTTTTCTGCCACACAGTACTTATAAATTGTGTAAATTAAAAGAAGCTCTCCTATGAAGTGGACTATTAATTTTCTGT TGCTTTTTTTACATTGTAAATGCTGATAAAAAGCCACTTCTGTTAATTATTTTACATCCAAGTGTCAATAATAGTTCGGCGATACCACTTTGTTTTCTTA TCTTTCAGGAGTCTATGTCATGATGTCTGGGCTAGATCTGGAGAGGCTTGTTTTGGCAGCTGGTCCCTTGGGTATAATGCAGGCATGTCTTGATGTCTCC CTTCCTTATGTTCGACAACGAGAGCAGTTTGGTCGTCCTATTGGAGAGTTCCAGTTTATACAGGGGAAGATTGCTGACATGTATACTTCTTTACAGTCCT CAAGGGCTTATGTGTATTCTGTAGCTCGGGACTGTGACAGCGGAAAAGTTGACCCGAAGGTGCCTCCACATATCTTTATCTTTTGGTTGCTATCACATTC TTCATTCTTTCCTTGAAAACACAACATTATGTTGCTGTCATATGATATACCAAGTATAAAATTGTCATTCTTGAAACGGTTGCATATTTTTTCAGTTTGT TTTAACTCAAGGTTAAAGTTTAGATATGATGTTGGTTCACTATACTTCTGCGGGTGCTAATTTTAGTCCAGTCCTCAATGCAACAAACTTCTACAATTTT TCTGCTTTCCATGCTCTCTTGTCTGCTAATTTCAGGATTGTGCTGGAGCTATACTTTGTGCTGCAGAAAGGGCAACACAAGTTGCTTTGCAGGCCATACA ATGTTTAGGTGGGAATGGCTATGTAAATGAGTATCCAACTGGGCGTTTCCTGAGAGACGCCAAACTCTACGAGATTGGTGCAGGAACTAGTGAGATCAGA AGAATGATTATTGGTCGCGAGCTCTTCAAGGAACAATGACATACCTCCCTATTTGCTATTCATTTGGCTGGTTCTGAGGCCCTCAGAGATTCCTTTGCAG ATGTATGTGAAAGTAATATTCATTCATCCTCATACTTAATAATAGAGTTGATCATTAATGCAAAGAATCAAAGCTTCCATAATATATTACCTTGTACTTT TTCTATGGAAATCTATCTTTAGAGCTACCCATTCCACTCAAATAAATGTTGGAAACAAATTTTCCAGTTAACTTGATAATAGAATATATGGTCATCATCT TTACAACTTTTGATGCTCATTACCTTTACAACCTTTTTGGGTGGATTTCATTATAAAACTATGAAAGTTGTGTTACCACTTACCACCAACTTTTTTTGTC AACCACTGCCTAATAAGATGATAGTCCATTATTTTATTAGAACATTCATTTGTTTAAGGTCAGGCATTTCTGGATGGCAGCAAAAAATACACTTCTGACT AAAGAATATAGGGGGATTACAGACCTCACACCAAACTGACCTGCTGTGATATTGAATAATGATTCATTCATGAAAATTCTGGCAAAATGGTTCATAACTA GAGTGCGTGTGATAAAGTTTACCAAATTATTTTGCATTTTCTTGTACCTTCCGGAAACCGTAAATCGTATCACACGACCAGATTCACAATTAACACTAGA GCTATGCTACACCATGATAGGAAATTTGGAAACCATCACCATCTTTATACTACATAGTACAAGTCTTAGGTAATGGCTTATTATATAATTCCATGAATAG CCACTATTTAATGAGTTTAGTGCGCTTAATTGTCAGTCCTCCTAGTGCTGACAATGCAACTGTTGTCGGGCTTATGAGCTCAAAGGGTAGTAATCAAACA TAGCAGCATAAAAAATATACATATAATGCTTTAGTGATTGGTCCAGCA BLAST |
Tissue | pods |
Gene name | LI_gene_184058; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_288485
Blastp | Isovaleryl-CoA dehydrogenase, mitochondrial from Oryza sativa with 81.31% of identity |
---|---|
Blastx | Isovaleryl-CoA dehydrogenase, mitochondrial from Arabidopsis with 86.41% of identity |
Eggnog | Dehydrogenase(ENOG410XNMY) |
Kegg | Link to kegg annotations (4337676) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019413615.1) |
Pfam | Acyl-CoA dehydrogenase, N-terminal domain (PF02771.15) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |