Id Trinity | TRINITY_DN51322_c0_g1_i4 |
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Name Transcript | Ll_transcript_288465 |
Sequence | CTTCATTTTTAGCATTCTGTACTAAAGAGTATTACGTAGGAACAGTGAATTAAATAAAGGATAAATGGGAATATTGCATTGAAGATCATCATTACCCATA TTTATTTTCTCCACTTTTCATCCTTATTGTTGTGACCATACCATGTTGCATAGGATCAACACCGCAAGGTCTTTTTGTGCTAAGGTTCTCAGAACCAAAC CTCACTCTGCTGCTGCTTTCTCAACTTCCTTGCTCTTCGATGAAACTCAGATACAGGTTCCTCTTAACATGCTAATGTTTTTATTTCCTAGATAGGATTT ATTTCATGTTCTTAGTAATATATAGCACAACACTACCTCACTGTTTGGGTGTTAAAGAATAAAAATTTGGATACCCCATCTGGGTTTTCTAGAAAAGTAC TATTGGGATAACATCTGCTGAAAATACTTGAGCTTATATGATCAAGAAAATAAGAAGATTGAACTATTTGAGTAGGAAAAAGATTGCTTTTGATACTGAA TGTTTAGGCTTTGTATATGGTATATGGCTGGTTATGAATGCTACTAGCATAAGATTGCACGGCATTCTGCCAATTAAAGAAACTAACTTGACATTTTTGG CAGCTTCAAACTCTACAAATTTCAAGTGGGTTGAAAATATTGAGACCCCCTTGAAAGCCTTATCTTTTATAGTGGGTTGAAAATTGCGAGATTTTGTATA CTAGCTTCTTCAAAGGTGAACTATGTCATGCTTTTAATGATTTCAAGGTTATAATACATTGAATGATACAGTTCAAAGAAAGTGTCTCTCAGTTTGCATC AGAAAACATTGCCCCTCATGCTTCAAAAATAGACCACACAAATTACTTTCCAAAGGAGATTAACCTATGGAAAAGCATGGGAGAATTTAATCTCCATGGG ATTACTGCACCAGAGGAATATGGAGGGCTTGGTCTAGGGTACTTGTATCACTGTATAGCAATGGAAGAGATAAGCCGTGCTTCAGGATCCGTTGGTCTTT CATACGGTGCTCATTCAAACCTGTGTATCAATCAGCTGGTAATTGAAGGGAACTTACGTCTCTTTAATTATAAGCTTGGTGATCATGTGATTAGTCTTTA GGATCGCCCTTTCTGTTTTTATTTAGGTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATACTTGCCGAAGGTTCTAGTTCTGCCTATCTTGATATTGTT CATTATCAGTAAAATACATGCTGCCTTTCCCTATTGCCGACTCAGTTAGCCAACACTGCTCATAGTTGATCTTTGCTTTCCATCCATCTCTTGTGATCAC AAGTAGCCCTTCTCAAATTTTCTGTCTATTTATAGGCTAAGCCTTTTTGTTTTTATTCAATCTTGAAGCTTATCTCTGGTGATCACGTGGGAGCTTTAGC AATGAGTGAGCCCAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAGGCTGATTGTGTGGATGGAGGCTATGTACTTAACGGGAACAAGATGTGGTGT ACTAACGGCCCCGTTGCTCAAACATTAGTATGTCTTTATTTAAACTTCATAGCATTTCCATGCCCATTGCCAGGGACAGATCTAGGAAAGGATAGAGGGA CGATCGGAGAATCCAACTTTTTTATATCTTGATGAATGTAATAGTCTACCTCTATAGTGTGAAATGTAGAACAATAATAGAACTGAAGAAGGAAAGTAAA AGCATTTACATACCTAATTAAATAAGTAAACTATACAATGAAAAAAAAGTGGAAGAGATGAAAGACTAAATCACTTGTTCAACCTCTTCTTTGCATTTGT TGGCTAATAATTTCTTTACCTATGGCTTGTATGGGGGATCTGAATGCCAATTTAGTATGAAACTAGATCATAGTATCTAGGCATATGCTGTGAATGCATA TCGTATATTTGATTGTGTGGATTGAATCAGGTTGTCTATGCAAAAACAAACATAACAGCTGGGTCAAAAGGAATCACCGCATTCATCATAGAGAAGGGAA TGCCTGGGTACATTAAACTGAACCTTGACATAAAGTTAAATGATCTTGAGTAGACAACAACCTCTATACTTCAACTTAGATAATCCTTAAGCAATACTGT GATCACATGCTATGGCTAATCTTCTAAGTTTCAACTGAACCTTAATTGTAGCTCAAACAACTGGACAATAAACTGTACCTTGAACCAAATTTTGGTATGT GTTTTCAACTCTAGACTCATGTGGTGGAACTTATTAGGTTCCATAGCAGGAACCTTTCATCATCAATTCGTTCAAATTTGATTTCTTAGTCTGTAGCTCT CAAAAATCCTTCTCTGAAAAGAAAACTTCTTACATGGTTGACATGGTTGGGATCTCTTTTAAATGATAAATCATTTGAATGCAGTGAAAAAATTACATGT TAAGGTTGACAGTCTGACATTTATTTCTGTTTGGCTACAGATTCAGTACTGCCCAGAAATTAGATAAACTCGGGATGCGAGGAAGTGATACATGTGAGCT TGTCTTTGAAAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAAGGGAAAGGTCTCGCTAATTGCTTCTGTAGTCTTTATTAATTTTAAAGCAGA TTATCTTTGTTATTAAGTTTAGTCCAGCATCCAAAAGTTTGTTCCAAGACAGTGGTTATTCTTATATGTTCCTGTTGGTAGATCTTATCACCCTCTCTGC CTGTTTCTTTCTTACTAATAATGTAAAATCATTTAAAGAAACCAGAAAAGGTTGTAGTTATATTCTTATCCTTATTACATATGAACTAGAATCTTGTTTC TAGTGGCAGCATTTTTCTGCCACACAGTACTTATAAATTGTGTAAATTAAAAGAAGCTCTCCTATGAAGTGGACTATTAATTTTCTGTTGCTTTTTTTAC ATTGTAAATGCTGATAAAAAGCCACTTCTGTTAATTATTTTACATCCAAGTGTCAATAATAGTTCGGCGATACCACTTTGTTTTCTTATCTTTCAGGAGT CTATGTCATGATGTCTGGGCTAGATCTGGAGAGGCTTGTTTTGGCAGCTGGTCCCTTGGGTATAATGCAGGCATGTCTTGATGTCTCCCTTCCTTATGTT CGACAACGAGAGCAGTTTGGTCGTCCTATTGGAGAGTTCCAGTTTATACAGGGGAAGATTGCTGACATGTATACTTCTTTACAGTCCTCAAGGGCTTATG TGTATTCTGTAGCTCGGGATTGTGACAATGGAAAAGTTGAACCAAAGGTGCCTCCACTTATCTTTATCTTTTGGTTACTAGAATATTATTAATTTTTTCC TTGAAGATGTAAGCTTCATCATGGGTTCTTTAAATTTATTATTGGCTATTTTCTATTAACTAAACTCCCCACATAAGGAATTAAGGATACACCCCAGTGT TTTAGATGGATGATGATGGCCTAATAAAATTCCGCCATCATGGCATTATAGGCAAATACCGGATGTTATCATGGTGATTTTTTGGTAGCCTAATACACGA GGCTTCCACATAGTGGAGTCTGAGGATGGTAGATGTATGCAAACCTTATTTAGAAGCTGTTTTCAGAATTTAAACTCATAACCTCATGATTACTAAAACA ACAATCATTGTGCCAAAAATATACACGTAAAAAATAAATAATAACATAAGCCACATGCCAAGTCATTTGAGGAGCTAATATGGTTAAGAATTTCTTGGAA AGACTAAGCAGATGGTACTTTGAAGAACTAAAATTACTACTGACTCTATTTTTGCCATGTTTTAAGGAGCTTGAACTTAAAGGTAAGATGTTGGGTCACT ATACTTCTACTGGTGCTATTTTAGTCTACCCCTCAATACAACAAACTTTCTGCTTTTCATGCTCCCTTTCCTGCTAATTTCAGGATTGTGCTGGAGCTAT ACTTTGCGCTGCCGAAAGAGCAACACAAGTTGCTTTGCAGGTAAATAATTTGTTTGCATATGTTGTTATAGAGCCAGGGATTCCAAGGGGGCAAGCACCA GTGCTCCCCCATTCATATATTTCGTACAATTAGTTATATAGAGTATTTTTTAAATGTAAAGTACCTTCATATATGCATATATATATATATATATATATAT ATATATATATATATATA BLAST |
Tissue | pods |
Gene name | LI_gene_184058; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_288465
Blastp | Isovaleryl-CoA dehydrogenase, mitochondrial from Oryza sativa with 80% of identity |
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Blastx | Isovaleryl-CoA dehydrogenase, mitochondrial from Arabidopsis with 89.29% of identity |
Eggnog | Dehydrogenase(ENOG410XNMY) |
Kegg | Link to kegg annotations (4337676) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019413615.1) |
Pfam | Acyl-CoA dehydrogenase, N-terminal domain (PF02771.15) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |