| Id Trinity | TRINITY_DN51328_c1_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_288215 |
| Sequence | GGATGAGCTTCTCAGATCCAAGACTGCACAACAGCAAAGACTTGCTGCTGCTTCTCAACTCATGGCATCTTCTTTTCCATACTCACCAAAGTGCATGAAT TTTCTATTACAGCAGCAACAAAATGATTCTCCAAGAGGGGCAGTTGCAGCTCTTATGATGAATGAAGAGTTGCACAAGTTTGGAAGATCAAGGCTTGAAA GGAATGATTTTTCTTTGCATAGTCCTGGAATTGTTAACCCAGCTTCAAGGCAGATCTACTTGACCTTTCCAGCTGATAGCACTTTCAGAGAGGAAGATGT TTCAAATTACTTCAGCATTTATGGGCCTGTTCAAGATGTGAGGATTCCATATCAGCAAAAGCGCATGTTCGGATTTGTAACATTTGTTTATCCGGAGACA GTGAAGCTCATTTTGTCTAAAGGAAACCCTCATTTTGTTTGCGATGCTCGAGTGCTCGTTAAACCCTACAAGGAGAAGGGAAAAGTTGTGGACAAAAAGC AGCAACAACTAGATCGGGGTGATTTTTCACCCTGTGGTACTCCTATTGGATTGGATGCTAGAGACCCATTTGATCTCCAAATTGGTGGAGGGAGGATGTA CTATAACTCTCAAGACATGGCGTGGCGGAGGACTTCGGAGGAGCAATCCGATTTTCAGCAAGCCCTTGAGCTTCAAAGTAGAAGGCTCATGAGTCTGCAA CTTCTTGACATCAAGAAGCAACACGAGCGTGCGCTTTCCACCGGAAGTCCAATTCCTTCTCCCACACTCTCTCCTAACATGTTCAATCAAAATCTTGGTT TTTCTTCATTTCACAGCAACTCAGAGAGCCCAGAGGATAGTGGTTTAGGATCTGCTCCTGCTAGCACTGCATCAATTCCGGTTGATCTGCAGATGCAACA AACAGTTAACATTTCTGTTGGCAAAGAAGTGGCAGTTAGTGGAGAGAATGAAAAAAGTGATTTTCAAGAATGCTTGGAGCATAATCTTCCTGATAGCCCT TTTGCTTCACCCACAAAAGCCATTGGTGACAACATGGCTGCATTCTCCAATGGACCTAATGAGGTTGTTAATTCAGATGCTTCAGCTGCCAACTCTAAAT TTAATACTGCCACTATGCTTCCATCAGCATCTGGTCTAGACCTGGGATCTTTCAAATCTTTTAACTGCCAAATTCCCAGGTTTCCTTCTGGCCATGGAAC AATTGGAATGATTGCCGGCACCGGTGATCCGATTGGCATTTAGTTTCCTAAGCTTTTGGGGAGACGAGCATATCCAAACAAACCTTGATATCAATACAAA TCTGTAGAGAATCACCACCACCAATGCCATCACTATCAATCAATTAATAATACTATACTACTTACTATCAATACAAAATGCATACTTAAAAGCAGTTTCA GTAAAAAGAAGTGGGACATGCACCTTTCCCTTTCTTTTGTTATCATTATTGCACCATTTTCACTTCTGTGTTGTCCCAAAAAGTATGTCACTTCGTGTGC TATTCTGTGATTGGTTGAAAATAATGCAGTTAAGTTAATAACTTAATAATAAAGTATTTTCCTGACCAATCGCAAGAGTGATACATTGAGTGACACTTTC TGGGACAGATGATGTGATTCGGCGGAGAATATAACCACAGGGTACAGAAGTAACACACAATCAGAGTTAATGTGTAGTAGTAAAAACTGTCACTAATTTC TACCCTTCCCTTTATTTCTCATTTTGGTTGTATTAGTGTTATTCTGTTAGTTCTATGCTGTTAGAGGGACAATTTAAAGTCTCTGTACAAATTAAGCACA ACCTAGAGAAAAAGAATGGTGCTGATGAAGCTGTAAAAGTAGTGCTGTAAAGGCTGATTCAAATCTTTGGTATAATTGTAAGTTCTTGATTTGGGTTGAA GTTCAAAAAGGGAAAGTTCTAATTATTCAGTCTTATCTGTAATGTAATGATATTTGTACTCAAAATTAGTCATTATGCAAAGTTATCACATCAACTCCTA GATTTAGAAAGATAAAGCAAAAAAGCAAAAGTGACTTTAGTTTTGTATTAATTGATCTCTTTGTCGGGCTCCCCTTTCTTATATATTAGTGTTTTTTTTG TATAATTTAGAGTATTTTTTCACTTTTTGGGTAAGAAATTAATATTTTTGGAGTGTGTAATTGTCTAATAAGTGTTATGTTTAAGAATCGACTCTTTGAT TTTTTAGTGTGATCATCATTTGTTTTCCTAAAAAATGTTACAAAAATGCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_184097; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_288215
| Blastp | Zinc finger CCCH domain-containing protein 22 from Oryza sativa with 49.27% of identity |
|---|---|
| Blastx | Zinc finger CCCH domain-containing protein 22 from Oryza sativa with 47.56% of identity |
| Eggnog | zinc finger CCCH domain-containing protein(ENOG410YCDX) |
| Kegg | Link to kegg annotations (4332722) |
| CantataDB | Link to cantataDB annotations (CNT0000302) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019450854.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |