Ll_transcript_287228

• Id Trinity: TRINITY_DN51342_c0_g5_i1
• Name Transcript: Ll_transcript_287228
• Sequence: GAAGACCCAAATTTGGAGACTTTCACTTTCACCTTATCGGTTCTATGATTCAATCCCCACCACTACACACAATCCTCATCTCACATATCTGCAAAACAAA AACAAAAACAAAAACAAAATCCAAAGCAGATAAGAGATTTTCAACAACAAAAAAAACACAGTGAAAGAGAAAAAAACAATGGAGCAAAACCTTATTGTTA TACCCAGTAAATCAAGGCTTCCACTTTCACTACTTCCTCACAATTCAATCCACTTTGAGTGCCATACCTCAACAAGGGTCTTTGCAAATTCTATGAATGT CTCTGTTGCTAAAAGGTCACACCCACAATTAATTGATGCCCACTTAAACCATTTATGCATTAATGGCCCCCTCAGTGAAGCTGTGTCAATTATTGACTCC ATGGCTCAACAAGGGTCCAAAGTGAAACCCTTTACCTATATGAATTTGTTACAATCTTGCATTGATAAAGATTGCATCTCAGTGGGTAGGGAATTGCATG CTAGGATTGGCTTGGTGGGAAAGGTGGATCCTTTTGTGGAGACAAAGTTGGTTAGCATGTATGCCAAATGTGGGCATTTGGAGGAGGCATGGAAAGTTTT TGATGAAATGCGTGAGAGAAATTTGTATACTTGGTCTGCTATGATTGGTGCCTGCTGTAGAGACCGGTGCTGGAAGGAAGTTGTGGACCTCTTTTATGAT ATGATGCGAGATGGGGTTTCACCTGATGAGTTTCTGATTCCGAAGATTGTGCAAGCCTGTGGAAAGTGCAGGGATTTAGAAACTGTGGAGTTGATACATT CTTTAGTGATCCGGTGCGGAATGTGCTCTTCTATGCGGATAAACAATTCAATTCTTGCTGTGTATGCTAAACATGGAGAGATGCATTGTGCGAAGAAGTT TTTGGAAAACATGGACGAGAGGGACAGTGTGACCTGGAATGCAATAATAACAGGGTTTTGCCAGAAGGGCAAGATTGAACAAGCTCGGAAGTATTTTGAT GCAATGCAGGAAAAAGGAATTGAACCTAGTTTGGTAACTTGGAACATACTCATTGCTAGTTATAATCAATTAGGGCATTGTGATATTGCAATGGATTTAA TGATGAAGATGGAGAGTGTTGGGATTACTCCAGATGTGTATACTTGGACTTCCATGATCTCTGGGTTTGCTCAAAGAGGCAGGATATATTGTGCTTTTGA TTTGTTGAAAGAGATGTTTTTAGCAGAGATTGAACCCAATAGTATTACAATTGCAAGTGCAGCCTCAGCATGTGCATCCTTAAAATCATTACGTATAGGA TTAGAAATTCATTCTATTGCTGTTAAGATGGGTTTGGCGGACGATGTGCTAATTGGTAATTCACTGATTGATATTTACTCCAAGTGTGGCAATCTGAAAG ATGCTCAAAGTGTTTTTGATATGATGTTAAAGAGAGATGTATATTCTTGGAACTCGATTATTGGAGGATATATCCAAGCTGGTTTCTGTGGTAAAGCCCA CGAATTATTTATCAAAATGCAGGAGTCTGATTCACCACCTAATATTGTTACATGGAATGTAATGATCACAGGATATATGCAAAATGGTGATGAGGATTGG GCATTTGATCTTTTTCAAAGGATTGAGAAAGATGGGAAAATTAAGCCAGATACAGCCTCATGGAATTCATTAATTTCTGGTTTCCTGCAAAGTGGACAAA AGGGCAAGGCCTTACAGATGTTTCGGAAGATGCAGTCTTTCCACATAGTCCCCAACTCAGTCACAATGCTAAGTATCATTCCTGCCTGTGCAAATTTATT GGCCCTGAAGAAAGTGAAAGAAATACATTGTTGTGCAGTGCGTCGAAACTTAGTGTCTGAACTTTCTGTATCAAATATACTCATTGACACTTATGCTAAG ACAGGAGATATATTGTATTCAAGAAGCATTTTTTATGGATTGTCTTTGAAAGATATCATCAGTTGGAACTCTCTAATTGCAGGTTATGTTTTACACGGCC ATTCAGAGTCTGCTCTTGATATTTTTTATCAGATGAGGGAGGAAGGAGTTCAACCACGTAAAGGTACTTTTGCAAGTATTATATCAGCTTTTGGTCATTC TGGAATGGTGGATGAGGGGAAGAAAGCTTTCTCTAGCATGAGTGAAGAATTTCATATAATACCAGGTGTGGACCATTATATTGCTATGGTCAATTTGTTT GGTCGTTCAGGTAAGCTTGCCGAAGCACTGGAGTTAATTCAAAATATGCCCTTTGAGCCTAATTCCTTCGTATGGGCTGCCTTGTTTACCGCCAGCAGGA TTCACAGGAATTTTGGATTGGCAATCCTTGCAGGAGAACGTATGCTTGAGTTGGAACCTGGAAATACTATAACTCGCCATTTACTTTCACAGGCATATTC ATTATGTGGGAAGTCTTGGGAAGCTCCAAAAATTACAAAGCTGAGAAAAGAAAAGGATGCTCCTGTTGGGCAGTGCTGGATTGAAAGGAAAAACTTGGTC TATACTTTTGTAGCCGGTGATCAGTCAAAAAGACATTCGGACAAGCTACATTCTTGGCTAAAACGGGTAGCTGTAAATGTCAAGGCACATATTTCTGACA TTGGACATTGCATCGAGGAAGAAGAGAAGGAAACTATTAGTAGTGTACATAGTGAGAAACTTGCATTTGCATTTGCTTTCATAGACCCTCATCGGTCACC TCGAGTTGTAAGGATAGTTAAAAAATTGAGAATGTGTAGAGATTGCCATAACACAGCGAAATACTTGTCATTGGCATATGAGTGTGAAATATATTTAAGC GATTCAAATTGCTTACACCATTTTAAAAGTGGCCACTGTTCTTGTAAGGATTATTGGTAGAGCAAAAGGATGTCAAGGAGAGTGATCTAGAAATATGGAA GTCTGACATATGATGTAGTTGTTCTTGTTGTACATAATTCTTTGACAATATCAACATGAAGAAAGTGACCTTTCACACAACTGAAAAGTTTTTGGTTTTC CCCTTTTTCACATTATGTATCTGGTTAAACTATGTAATATATAGAATTCCATTTGGCTATTATGCATGTATATTGTGATGCTTTCCAAATGAAAGATTTC AG
• Tissue: pods
• Gene name: LI_gene_184209;
• Additional information: details;

Expression of Ll_transcript_287228

FPKM

• PAB: 0.6
• PNAB: 2.3
• PS1: 3.2
• PS2: 1.8
• PS3: 2.6
• PW1: 2.4
• PW2: 2.7
• PW3: 3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_287228

• Blastp: Pentatricopeptide repeat-containing protein At1g19720 from Arabidopsis with 53.67% of identity
• Blastx: Pentatricopeptide repeat-containing protein At1g19720 from Arabidopsis with 53.67% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT1G19720)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019455715.1)
• Pfam: PPR repeat (PF01535.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;