| Id Trinity | TRINITY_DN51343_c2_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_288892 |
| Sequence | AAAAAAGATAATTGGGCCTGTGATGGTACTAAAAAGCCCAACTCTGCTAGAGAAAACAAAGAGCCTCTTTCGTCCTTTTCCAATATCCGACAACATCATG AGCCGCTACGACGGCCGCTCCGGCGACCCCACTTCCTACCGTGAACGGCGGAGTGATTCCGGGCTAGGTGCAGCTTCAGGGTATGGTGGATCAGTACACT CTTCATCTAGCAAAACGAATGACGATGGTGGGTCACCGAGGAAGCTCAACTTGGATGGGTTGCCTCATTTTGAGAAAAACTTCTACTCTGAGTCACCGGC AGTAAAGGCAATGACCGAGGATGAAGTTGATGAGTACCGGAAGCGGAGGGAAATAACTGTTGAAGGCCGAGATGTCCCGAAACCTGTAAAGACGTTTCAT GATGTTGGTTTTCCAGGTACATAGTTTCAGTTTCTTTGTTATTATTTCATAGTTTTGCTATGCACTTTTTTCAGCTCGAAGTACATGACTACTCTTTTCT TTATTACTTGAGGTTTTGCACCATGGGTTGCACAAAACCATGTCATGAACTGGTAATTCTAAGGACAATGGATTTAATAATTATAAATTATAATAGTCCT GATTTGTTGCATAAAGTGGGATTTTTAATTTCATCTGTTGTAGTTTGATGATGAAGTGAGCTTGGGACTGAATACAAGTTTGAGGTTTAGTTCTATGGTA TGATATGATTGTCAAGCAAAATATTGTGCTAAATGGGATTTCCTAATGGCCAAGGGATCAGTTTGCTTATCTTATTGGACGGCAGCATGTGATATCATTA GATTGAAGTGGTCCAAATTTCGACTTTGAAGAAAACAAGCCATAAAAGAAAGGAGATCATTTTGTTTGGAAATTGTTTTACATTATTATCATGAGAGTAC TTTCTTATTTTATGGGATGCCTTGTTTCAGATATCTCCTACTGACTTTACAACCTTGATTTAACCCAGAATATGTAATTCAAGAAATTGAAAAAGCTGGC TTTACCGAACCTACAGCCATTCAATCTCAAGGCTGGCCAATGGCTTTGAAAGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTTG CGTATTTGTTGCCTGCCATAGTGCATGTTAACGCTCAGCCGATTCTAGATCTTGGAGATGGACCAATTGTGTTAGTCTTGGCTCCAACTCGTGAACTTGC TGTCCAAATTCAACAAGAGGCTACTAAATTTGGTGAATCATCAAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGACCTCAAGTGCGCGAT CTACAGAAAGGTGTTGAAATTGTAATTGCAACCCCGGGAAGGTTAATTGATATGCTCGAGTCAAATCACACTAACTTGCGGAGGGTCACATACCTTGTAT TGGATGAAGCTGATAGAATGTTAGACATGGGTTTTGACCCTCAGATTCGGAAGATTGCCTCTCAGATTCGTCCAGACCGTCAAACTTTGTACTGGAGTGC CACCTGGCCAAAGGAGGTTGAACAATTGTCAAGAAAGTTCCTTTATAACCCATACAAAGTAATTATTGGTTCCGAGGATTTAAAAGCTAACCATGCAATA AAGCAATATGTTGACATTGTTTCTGAAAAGCAGAAATATGATAAATTGGTGAAATTGCTGGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGG ATACGAAGAAAGGATGTGATCAGATCACTAGGCAGCTCCGCATGGATGGATGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGGGATTG G BLAST |
| Tissue | pods |
| Gene name | LI_gene_184215; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_288892
| Blastp | DEAD-box ATP-dependent RNA helicase 20 from Oryza sativa with 91.34% of identity |
|---|---|
| Blastx | DEAD-box ATP-dependent RNA helicase 20 from Oryza sativa with 90.68% of identity |
| Eggnog | purine NTP-dependent helicase activity(COG0513) |
| Kegg | Link to kegg annotations (9268869) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019424682.1) |
| Pfam | DEAD/DEAH box helicase (PF00270.28) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |