| Id Trinity | TRINITY_DN51344_c0_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_288321 |
| Sequence | CTGGGTTGGTGTCAAATTAGTATTTTTTTCTTCTCAAAGGGTCGTGCTTTGACTTTCTACCAATTCCTTTTGTGACACATGTTGGTGTATTCTGCTCGTC TCAGTTCATGCAATTTAGGTTCTTAGTTTTTTGTACCAGGCATCAGAGAATTGAGGATATGATGGTGGCTATGATGTATAGAGGGGAGTAGAACTAGGGT TGGTGTTCAAAATGAGAAGGGAGCTAAAAGAGGGATGCCGAGCTTCGATTCTCAGTTACCCATTTCAAATGCACTGTATATTTCCTTTATGCTGATTTTT TGTTGCAAATGTTGGTTTTGATTCATAGTTTTAGTTATTTATCATGTATTTCTTGCCTATTTAGATTGAGATATTTCTTAGGCCTTTAATTTCACATTAG GGTTTATAGGATGATTCAAGGAATATGCAGAACACTGATTTTTTTGTTAATTGGGTTTGGGTCTCTAGCGTTTTGAATAAGTAATAGATGCTAAAGGTTC TATTATACATTCCGGTTTTTTTGAATTTAACTAAATAAACTAGTGATGCTAAAATGGACTTATGCAGTTATGCCCTTCTAATTGGAGCTAAATACCTTTC CTATATCTGTGAATGTGGGTTTGAATTCAAGATTGTAGGGACTATACCTAGAGATAATTTCAGCAAACCGCTTTGCTACTGCATTCACAATTTTAGCACA GTTGCCCTAGTTTAAAACTATAAACTTTCTGCTTCAGTCAGAAAGGCTGAACCAGACTAACTGTTCCATTTCTAATTCCCTTTATGGGTATAATAGGTTC ATTAGTTGACATGGGTATATTACGTTTCGAAATAGTAAATGTACTGCGAGATGAGTACCACTTATCTATACTTATTTTTATATTTATAAGAAGGTCCAGG ATGACCCCTTTCATAAATTTGTAATAGATAGCTTATAAATCTAGATAGAATGAGTTTTAATAGAAACAGTCAAACAGTACAGAACTGCTTGATGCATCAC ATTTTTTTTAAAAACTAATAAATAAATTAGTGCACTATTTAGTAGCTTAAAATAATGATGATATGACAAAAAAAATTATTAACTAAAAGGGCGGCTCAGT GCACAAGGTTCCCACCTGGTGGGATCTAAGAATGGTAGATATGCACAGCCTTACCCTTGCAAAGGAAGGGATCGTTTCCACGATTTGAACCCATGATCTC CAGGTCACAAGACAAGCAACCTTAGCATTGCGCCGAGGCTCTCCCTCAACTTCTTATTAACTACTTTTCAAATATCCTACCAATGCCTTATATGCGTTTA TAGAGCTTGGAGCATCCATAATCTTCCCTTCTACTAGTAGTCTAGTTTTACCACCAGATGCGTATTTTAACATATTGACTGACTTGTGTTAGCATGGCTT TCAGCTATACAAAGGGGAGCACAATCGATTCTTTTCATATTTCTGACTTTGGAGCATTTGATCAATCATACCGCATAGAGAATACTGTTTATCTGAGTAG AAGTAAGTACTCCTGTGCACCAACATGGTGAAGTTTACATGTAACAAACATATAATGATATGTTGTATAATTATCAAATCATCTTTACAGAAACATATTT TTTATCTGTCTAAATGATGCTTAATTATCATTTATTCAAAAAAGAGAAATACTAGGGATCTGTGTAATGGTTGCTTTTTGCAAGCTGTCAGTGTGTAGCT ACATGGCAAAATTTGCATTAAGAAAAGGAATAATTGCACTCGCACAGACATACCCATTCACTAATGTACACATGATGTTGCTGTTGGCTAAATAGCTGGA TATTCATGTCTATCATCTTGCTCATTTTTTTGAACTCTCGCTTACAAGTATAGACTTTTTTCTCCAGCTTTTCAGTCTCTAATTAATACTCGTGATATAT GATTCAGATTCAACTATTAATTTACTAAGTAGCGAATCAATTTCACGTGGTCCTGTTGATAAGGTGAGTTTTTAAAGTTATTTTCAACTGACGAGATTCC ATATTTGGTAACTAAGGTGAATCTTAGCTTGCTGCTGGCTACAGTATGTCTTATAAGAACTTTTCTCTTTTTCTCTTTAATTTAGTTGACAACTTCACTT GATAAAAGCCCATTGACGAACCAAACAGAGCCTCATAGGTTGCAATTTCAAAAGGAAAAGGTTCAATCATCAAATCCTCTTACTATATTAATTGGTAATA CTGAAAACTGGGAAGAGTCTGCCATGGCTGATGCCAGTCCTAGGACTGATATTTCTACAGATGCTGACACCGATGACAAGAATCAGCGGTTTGATAGAAG TCAATCTCTTGCTGGTGTGGCTTCTGACTCCAGTGACAGATCAAAGGATAAAACAGATCAGAAGAGTCTCCGCAGGCTTGCTCAGAATCGTGAGGCAGCA AGGAAAAGTCGTCTGAGAAAGAAAGCTTATGTCCAACAGCTGGAAAGTAGTCGTTTGAAGCTGACCCAGCTAGAGCAAGAGCTTCAGCGAGCTAGGCAGC AGGGAGTCTTCATATCAAGCTCGGGTGATCAAGCACATTCAATGAGTGGAAATGGGGCAATGCAGTTTGACGCTGAATATGCAAGGTGGCAGGAAGAGCA GAATCGGCAAATTAATGAGCTAAGAGCAGCTGTAAATTCTCATGCAAGTGATACGGAACTCCGCATGATAATTGATGGTATATTGGCACATTATGATGAG ATTTTTAGGCTGAAAGGTATTGCAGCTAAGGCTGATGTTTTCCATTTGTTGTCTGGAATGTGGAAAACACCCGCCGAGAGATGTTTTTTGTGGCTAGGTG GTTTTCGGTCATCTGAAGTCCTTAAGCTTCTAGTAAATCAATTGGAGCCTCTCACGGAGCAGCAGGTGGCGGGTATCACCAACTTGCAGCAATCATCACA ACAAGCAGAAGATGCATTATCTCAGGGCATGGATGCATTGCAACAGTCCCTTGCTGAGACATTGTCTACCGGATCGCAAAACTCATCCGGTTCATCCGGG AATGTGGCAAATTACATGGGTCAAATGGCAATGGCCATGGGTAAGCTAGGGACACTTGAAGGGTTTATTCGACAGGCTGACAATCTGCGGCAGCAAACTC TACAACAAATGCACCGTATACTGACAACTCGTCAGTCGGCCCGTGCTCTCCTTGCAATACATGACTATTTTTCACGGCTTCGTGCTCTCAGTTCGCTCTG GCTTGCCCGCCCAAGAGATTGATGTGTGGTAAATGTTTGTTAAAAGTTAATTTAATAGGTCTTTCACCATCAATACTTGATCATTGTAGGTTTTACTTTT AATAAGTTTTATTGTATTGTATTGTAGTTTTAACAAGTTTTTTTTGTAAAGTAGTATGGTAATAGTGTCCATTGTAATTGTTGCTGAAGGACTTTTGGTT TCAATACAAAAAAATAGGGTTACATATGATAAGTTTTAAGGGTTGGTTCAGCTGACACATTGATTTGTGATTTGAGTTTGGAAGTAAGTACTACAAGATC TCATACATTGAAACTCGTAGATATGGATCCAAATTCATTAGTATAAAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_184221; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_288321
| Blastp | Transcription factor HBP-1b(c1) from Triticum with 79.64% of identity |
|---|---|
| Blastx | Transcription factor TGA2.2 from Oryza sativa with 80.56% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | Link to cantataDB annotations (CNT0000028) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019449313.1) |
| Pfam | Basic region leucine zipper (PF07716.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |