Ll_transcript_288362

• Id Trinity: TRINITY_DN51348_c1_g1_i10
• Name Transcript: Ll_transcript_288362
• Sequence: CAGCCCACACCTTAAAAAACAAAGCATATAAGCATAAGCTCACACAAAAACCTCTTTTCATAATCATCACTTTTTTTCTTCTCATTCCAAACAACAAAAT TTTGAGTTTAAGTTCCACACTTTGCACATATGAAAAGGGTAAGGGATGATGTTTATTCTGGCCCTCAATTCAAACGCCCCTTTGGTTCATCACGTGCTGC TGATTCCTATGGCCAAAATCAAATCCCTAGTGGTGGAGGAGGAGCAGGCGGTGGGGGTGGAGGAGGCGGAGGAGCAACCACATCGCAGAAACTGACTACC AATGATGCCTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCAAGACCAAAGAGAAAAATATGATTTGTTCCTTGAGGTTATGAAAGATTTCAAGGCTC AAAGGATTGACACTGCTGGTGTCATAGCAAGAGTGAAGGAGCTATTCAAAGGGCATAATAATTTGATTTTTGGATTTAATACTTTCTTGCCGAAGGGTTA TGAGATAACACTTGATGAAGGTGATGCTCCTCAAAAGAAAACAGTTGAATTTGAAGAAGCTATTACTTTTGTGAACAGGATAAAGAAACGATTCCAAAAT GACGACCATGTTTACAAGTCTTTCTTGGACATATTGAATATGTACCGCAAAGAGCACAAGGACATTGGCGAGGTTTACAGTGAGGTTGCAACCCTTTTCA AGGACCATCGAGATTTACTCGACGAGTTCACTAGATTCTTACCAGATACTTCTGGAACACATTCTATGCCGCATGCTCCATTTGCTCGAAGTTCATTGCA GCGCTTTAGTGAGCGAAGTTCTTCAGCACCCATGATGCGGCCAATTCAAGTAGACAAGCAACGTTATCGACGAGATAGGATTCTTCCTTCGCATGATCGC GATTTGAGTGTTGATCACACTGATCTTGATGATGACAAAACTATGATCATGAACAAGGAACAGAGGAAACGCGAGAGCAGGGATAGGAGAATTCGTGATC ATGATGAGAGAGAAGCTGATCTTGATAACAACAGGGATTTGAACTCTCAACGCTTTCCTGATAAAAGGAAATCTGTCAAAAAGGCTGATGGTTTTGGATT GACTTCTGACTTTGCTTCTCATGAGGACAAAGATTCCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAAAAAGTTAAGGAGAAGTTGAGCAGT GCAGATGACTACCAAGCATTCTTGAAGTGCCTTCACATTTTCAGCAATGGAATAATAAAAAGGACTGATTTGCAAAATTTGGTAACTGATTTACTTGGAA AACATTCGGACCTTATGGATGAATTCAATGATTTCCTGGAGCGTTGTGAGAATATTGATGGATTCCTTGCCGGTGTCATGAGTAAAAAGTCATTGTCTAC CGATGCTCATGCGTCAAGATCATCAAAGTTGGAGGACAAAGACAAAGAGAAGAAGCGTGATATGGATGGAGGTAAAGAGAAGGAAAGATACAAGGACAAC AAATACATGGACAAATCCATTCAAGAGCTCGACCTTAATGATTGTGAATGTTGTTCTCCCAGCTACCGGCGTCTGCCAGCAGATTATCCATTTCCTACGG TCAGTCATAGATCTGAGCTTGCTGCTGAAGTGTTGAATGATGATTGGGTATCTGTGACATCAGGAAGTGAAGATTACTCTTTCAAGCATATGCGCAGGAA TCAGTATGAAGAAAACTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGCTATTAGAGTCTGTCAGTTCAGCTGCTAAACGTGCAGAGGAATTG TATAATAACATTGCTGAAAATAAGATCAATATGGAGAGTCTGGGCCGTGTTGAAGATCATTTTACCGCACTAAATGTAAGGTGCATTGAACGTCTATATG GTGACCATGGTCTTGATGTTGTAGACATTTTGCGTAAAAATCCAACTCATTCCCTGCCTGTCATAATTACCCGACTGAAGCAGAAACAAGAGGAGTGGAC TAGGTGTCGTTCAGATTTTAATAAGGTCTGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTTGATCACCGTAGCTTCTACTTCAAGCAACAAGAT TCAAAGAACTTGAGCACAAAATCTTTGGTGGCTGAGATTAAAGAAATTAAAGAGAAGCAGCAAGAGGAGGATGATATTCTTCAGTCGATTTCTGCTGGAA ATAAACAGCCTCTAATTCCACATCTCGAATTTGAATATTCTGATGCTGGGATTCATGAAGACCTGTATAAACTTGTTCGATACTCGTGTGAGGAGGTCTT CTCTAGTAAGGAGTTGTTAAGTAAAATTATGAGACTTTGGGATACCTTCTTGGAGCCAATGCTCGGTGTTCCTTCCCAGTCTTGTAGGACAGAAAGGGTC GAGGACAGGAAAGAAAGCCACAATGCCTGTGATGGAAGTCCTCACAGAGACTCGGTTTCAATAAACTCAAGGTTACCGAAATTGAATAAGAATGAGGCTG ATGGTAGGGTAACGGAAGTGAAGAATGCTCATCGGACAAGTTTAGTAGCTAATGGTAAAGAAAATGTATCTGTCGGTGGTGAACTGGTTTGTAGAGACGA TCCAATGATGGATAAAGGGCAGAAAAGTGTAGACTGCAGTGTGAAAGTGTCTGGATTTAGTAAACCATTTGCCTCTGATGAACAAGTTTCTAAAAATAAT GCATCAATTGCAGTTAGAGAAGAAAATAGCCTGAGCAGAACCAATGCAGAATTGAATGCAGGCTGTGTTACTACTCCATCACGGGCTACTGATACCGACG ACTCTGTGGCCAAGTGTCAGAGTGCTAATGCTCCATTGGTGGAGGGATGTGACACTACAGCTCCGGTTCCAGTAGTGAATGGGGTGCTAACTGAGAGCAG TAAAGTTAAAAGCCATGAAGAATCTGCTGGGCCTAGCAAAATTGAAAAGGAAGAGGGTGAATTATCACCAAATGGTGATTCCGAGGAAGATAACTTTGTT GGTTATGAAAATTCAAATGCACAGTCAATGGTCAAGTCAAAGCACAATATCGAAATAAGGAAATATCATTCTAGAAATGGAGAGGACGAGAGCTGTCCTG ATGGTGTAGGTGATAATGACGCAGATACTGATGACGAGGACAGTGACGATGTTTCTGCAGTTGGTGAAGATGCCTCAGGCAGTGATTCTGCTGGTGATGA AGGCTCCCGTGAAGATCACGAGGAGGAGGAAGATATGGAACACGATGATGTTGATGCTAAGGCTGAGAGTGAAGGCGAAGCTGATGGAGATGCACATTCT GTTGGAGATGGTTTGTCATTACCATTGTCCGAGAGGTTCCTTTCGTCAGTGAAACCCCTCACAAAGCATATATCAGCAGTTTCATTTGTTGAAGAAATGA AGGATTCCAGGGTGTTTTATGGAAATGACAATTTTTATGCGCTTTTTAGGCTCCATCAAATTCTTTATGAAAGGATCTTATCAGCAAAAACAAATTCAAT GAGTGCAGAAACGAAATGGAAAACGAAGGATGCTAGTTCCGCAGATCCTTACTCAAGATTTATGAATGCGTTGTACAACTTGCTTGATGGATCTTCTGAG AATGCAAAGTTTGAAGATGAGTGCCGAGCGGTTATTGGGAATCAGTCGTATGTGTTATTCACATTGGACAAGTTAATATATAAGTTGGTCAGACAGCTTC AAACTGTCGCAACCGATGAGGTAGACAGTAAACTTCTCCAATTGTACGAGTATGAGAAGTCTCGGAAACCTGGGAAACTAAATGATTCAGTCTATCATGC AAATGCACATGTCATCCTTAATGAGGAGAATATATATCGATTGCAATGTTCTTCTACTCCTTCTCGACTTTCCATCCAGATCATGGACAATATGAATGAA AAGCCTGAGATGTTTGCTGTATCTATTGATCCGGATTTTTCCTCTTATCTGCAAAGCGATTTTCTGTCTGCCTCTCCTTGCAAAAAGGAACCAAATGGCG TTATACTGCGAAGAAACAAACACAAATATCGAGGCTTAGATGAGCTCTCTGCAATTTCTTCTGCCATGGATGGCGTTAAAGTGATTAACGGATTGGAATG CAAGATAGCCTGCAACTCATCTAAGATTTCCTATGTTCTCGACACACAAGATTTTTTCTTCCGCCCCAGAAGGAAAAGAGGAACATCACGGACCGCGTCC ACGTCTACTACCCGACATTCTCGGGAGGAAAGATTTCGCAAATTGTTGGCATAACCTTAATGCTTTGTATACCCATTGCAACAGAAACCCTTTAGATACA ACAAGAAATTCATGTTAAAGCAGTTTAAGACACTCAAATCCATACTTTTTATGTCTAAAGGAGTCTCGGTGCAACAACCTAGGAATCCTTTGGTTGTTAA TTTTATTGTCATGATGCAAACATGAAGGTTAGGAGGGGAATGCAAATTGGTGCCTCTTCTATGTAAATAGTTTCCTGCATAATATATTAGTAGAAATTTG TACCAATTTGATCTTGCTCTTAATTAAAGGTGCAATTATATGGAATTAGATTCATATTGTTTTTTTTTTTTTTCATTGTTCCTATATAATACTTGTCTTG TTGGATTGGTGACCCTAAAATAGATCACCAATGGATTAATGAACACATGAGGTGCAATGGAAAAGCTTTTCCAATGTAAAA
• Tissue: pods
• Gene name: LI_gene_184255;
• Additional information: details;

Expression of Ll_transcript_288362

FPKM

• PAB: 0.6
• PNAB: 7.7
• PS1: 9.4
• PS2: 6.5
• PS3: 10.8
• PW1: 2.3
• PW2: 6.1
• PW3: 4.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_288362

• Blastp: Paired amphipathic helix protein Sin3-like 2 from Arabidopsis with 57.76% of identity
• Blastx: Paired amphipathic helix protein Sin3-like 2 from Arabidopsis with 56.81% of identity
• Eggnog: Paired AMPhipathic helix protein(COG5602)
• Kegg: Link to kegg annotations (AT5G15020)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019442610.1)
• Pfam: Paired amphipathic helix repeat (PF02671.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;