Ll_transcript_287404

• Id Trinity: TRINITY_DN51368_c4_g1_i8
• Name Transcript: Ll_transcript_287404
• Sequence: CCAATTTCCATCTCAAAGAAAATATATCGTGGTTGAAATGTAAAAGGGGTGAAATGTAAAATGGATGAAATAAAGGGAGTGAAATGTAAATAAAGTGAAA AGAGAAATGGTTATCCTAACCTAGTATTAAGGATATCAACCAGAGTTGTCTGTTATTTGGTGTTAGATAACAGCATGGGTATCAAGACCTTTACTTTCGC CGCCGCTACTCCTCCGTTATCCGTGATCGCCGCCGCTAAGCTCGCCGGAATTTCTCCAATCATAGACACCTCCCTTCCTTCTGATTCCGTTCCCACATTT CTCTTCTCTAATGGGCTAAAATTGCATGGAGCATATGTACTTCTGCGTTATGTTGGTCGAGTTGCCAACATTCCCGATTTCTATGGGCAAAATGCAATCG AAGCTGGCCAGATTGATGAGTGGCTGGATTATGCTCCTGTACTCTCATCAGGCCCTGCTTTTGAGAATGGATGCAAATATATTGATGAGTACTTGGAGAA GCGTACATTTTTTGTTGGTCATTCACTATCAATTGCAGACCTAGCAATATGGTCCGGTCTTGCAGGTAAAGATTTTTAATAATACCTATTTTCAACTTTT GATGCTGCTAGGTCTTTTGTAAACTACATTTGATATGTTTGTGATCATTACATTTTTGTTTGTTGTAACCATGTTGACAAACTAGGTTTATGGCTACCTT ATCTAGATAATGATCTATTCATAATCAACTAGGTTTAGTTTGTAGCTTTATTGTCTCGTTTAAACAATGAATAATTTTGAATCCTCCTAATGTTTCAGAC TTTCAGCCTAAAAAACCTTCTAACAGGCTAGTACTAATTAAAGAAAGGATCCAGTTCTTATTCCTAAGGCATTGAATGCATTTACTTTATTGATTTAATA CTTCCTTTATTTAGTATTAGAAGAACTTTAGGCTAAAATATTACGAGGATTTAGCATTACTCGAAAAGTAATTTGGCCGCAGTTGATAATTTTATATAAT ATCGTGGGAGCATTCATCAAGAAAATGTTGTACCTTCCATTTCTACCTTCTAGTTAATGTTAAGTTTTCAGCCAATTTGTTTTTGAGCCATTATCACATG TAATTTGATGCGCCATTGTCATTACCCAATTTGTGTACATGTTATGTTTTCTATAAACTTTTGCAGTAACAGGAAAGAGATGGGAAAGTCTAAGGAAGTC AAAGAAATATCCAAACCTTGTACGATGGTTCAATTCTTTAGTGGTGGAATACGGTACTGTCTTAAATGAAGTCATAACAACATATTCTGGCAAAAAAGGT TTGGCAGAACCATCAGACAGTAAGTCAAAAGACCAGACAGTAGCCCCTGATCAAGTCAAGAAAGTGAATGGGAATGTGTCAGAAAAGGTTAAGGGAGGAA GCAAACCTTCAGCAGAAATAGATCTTCCAGATGCTGTAGTTGGAAAAGTTTGCGTGCGATTTGCACCTGAACCCAGTGGTTATCTTCACATTGGACACTC AAAAGCTGCTCTGTTGAACAAATATTTTGCTGAGCGATACCAAGGCCATGTTATTATCCGTTTTGATGATACAAATCCTGCTAAAGAAAGTAATGAATTT GTTGACAACTTGTTGAAAGATATTGATACATTGGGTATCAAATATGAAAAAATAACATATACATCAGATTACTTCCCTGAATTGATGAAAACAGCTGAAA ATTTAATTCGCCAGGGTAAAGCATATGTTGATGACACTCCACGTGAACAAATGCAGAAAGAGAGAATGGATGGAATAGATTCTAAAAGAAGAAACAATAG CATCGAGGAGAATTTGAAATTATGGAAGGAAATGATTGCAGGATCAGAGAGGGGCTTACAGTGCTGTGTCCGTGGCAAATTGGATATGCAGAACCCAAAC AAATCACTTCGAGATCCAGTATATTATCGTTGCAATCCAATGCCTCATCATAGAATTGGATCCAAGTACAAAGTTTACCCAACGTATGATTTTGCATGTC CATATGTTGATTCTATAGAAGGAGTCACCCATGCCCTTCGATCTAGTGAGTACCATGATCGCAATCCTCAGTATTACTGGATTCAACAGGACATGGGACT TAGAAAAGTTCTCATCTTTGAATTTAGTCGGTTGAATATGGTATATACTCTTCTCAGCAAACGAAAGCTTCTGTGGTTTGTCCAAAATGGGAAAGTTGAT GGATGGGACGATCCACGATTTCCTACAGTACAAGGAATTGTGCGTAGAGGTTTGAAAATCGAAGCGCTAATACAGTTCATTGTTGAGCAAGGGGCGTCAA AAAATCTCAATCTCATGGAATGGGACAAGCTCTGGACCATAAATAAGAAGATTATTGACCCCGTCTGTCCTAGACACACTGCTGTGATTGCAGAAAGACG TGTGTTGTTGACCCTCACTGATGGTCCTGAGAAACCATTTGTCCGCATCATACCTAGGCACAAGAAGTACGAAGCTGCTGGAGATAAAGCTACAACATAT ACTAAAAGGGTATGGATTGATTATGCTGATGCAGAGACCATAGCAGCAGGTGAGGAGGTAACCTTAATGGACTGGGGAAATGCCATAGTGGAACAAATAG AGAAGGACCAAGATGGGAATATCACTGGGTTGAGTGGTGTTTTACATCTTGAAGGATCTGTGAAGACCACAAAATTGAAACTCACTTGGCTACCTGAGAT TGATGAACTAGTTAGCCTGACATTGGTGGAGTTTGATTATCTTATTACAAAGAAGAAGCTTGAGGAAGGAGAGGATTTCGTTGATGTGGTAAACCCATCT ACAAAAAAGGAGACACTTGCATATGGAGACTCAAACTTGCGAAATATTCAGCATGGAGATGTATTGCAGCTGGAGAGGAAAGGGTACTTCAAGTGTGATG TACCCTTCCTTAGGCTCTCAAAACCAATCGTGCTATTTGCAATCCCTGATGGAAGGGGCAAACATGCTTGAAGTGATTTCTTTCTTTTTACTTAAACTGT TCTAGAACATCTTCCAAACTTAGAAGTTGTTGATGCGGATAAGAAGTTACTCTATAGAACTATTTTCATGTTTAGTATTACTACTATATTATGTTTATAC AAACCTTTTTAATTGTGTTCCTGACTAGCAATTGGAAATGTTTTTTTCTCTAGTTTGGACAAATTGGAATAGTTTTCACATAAAAAAAGAAAAGCTATTC AGACTATGTTTACTTAAGTGGGAATACCAAATGGCAATCTTCAATTTGTTTGGTAATTTTTCCACTCGAGAAGGGATGTGGACAAAAGGCAGAGTGTCTG GCTATATCAGTTTTAGTGGCCCATGCTTAGGTGCTAGCTTTATTGTCTTTTTTCAAAGATGATTGAAGTTCAAGGCATAAGAAATCATTAGTATATAAAG ATATTTTGATATAGTGATTCAGTTTCCCATTATGAATGTATCCTGTATGGCACTTTATTTGCTGCTATCACTTAAA
• Tissue: pods
• Gene name: LI_gene_184402;
• Additional information: details;

Expression of Ll_transcript_287404

FPKM

• PAB: 0.3
• PNAB: 0.8
• PS1: 0.6
• PS2: 0.4
• PS3: 0.5
• PW1: 1
• PW2: 0.9
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_287404

• Blastp: Glutamate--tRNA ligase, cytoplasmic from Arabidopsis with 78.82% of identity
• Blastx: Glutamate--tRNA ligase, cytoplasmic from Arabidopsis with 75.58% of identity
• Eggnog: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) (By similarity)(COG0008)
• Kegg: Link to kegg annotations (AT5G26710)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019427469.1)
• Pfam: tRNA synthetases class I (E and Q), catalytic domain (PF00749.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;