| Id Trinity | TRINITY_DN51391_c1_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_288071 |
| Sequence | ATCACACTTTCTTCGGACCTCATTTTCCTCTCTCTCTCTCTCTCTCTGCAAACCCTTCTTTCCTTCCAGATATATCTTCCTTCACAGCCATGGCCAAGAA GCGAAAGCTCCGATCCTCCGACTCCGAACCTACCAAAGAATCCGAAATTGAATCCCCTATTGAACATGAACAACAAACCCTAGAAGGAGAGGGAATCGAG CACGAACAACAATCCATGGAAGAATACCAACAACCGCCAAACGTCGAAGAAGAAGAAGAAGAAGAAACCCTAGAAGACCAGAATCAGGAGCAGGATGCTC AACCTTCCAACGATGCATCTGAATTGGTTAATGTTGAAGTAAACGGTGACGACAACAACAACAACAACGAAGAGGAAGAAGAAGAAGAAGACCTCGAATT GGAAGATGAACCTGTGGAGAAGCTTCTAGAACCTTTCACCAAGGAGCAGCTCCACTCTCTTGTCAAGGAAGCGCTCGAGAAGTTCCCTGATTTCGTCGAA AACGTTCGCCACCTGGCTGACGTGGACCCCTCTCACCGCAAAATCTTCATACACGGCCTTGGCTGGGATGCAACAGCCGAAACCCTGACCTCTGTCTTCT CGAAGTACGGCGAGATCGAAGACTGCAAGGCTGTCACTGATAAGCTCTCTGGGAAATCGAAGGGATACGCCTTTATCCTTTTCAAGCATCGTAGTGGGGC CCGCAAGGCTCTGAAGCAGCCACAGAAGACAATTGGTAACCGGATTACATCGTGCCAATTGGCCTCTGCTGGACCTGTTCCTGCACCACCTCCTGTGGCT CCTGCGGTTTCTGAGTATACTCAAAGGAAGATTTTTGTGAGCAATGTGAGTGCCGACATTGATCCCCAGAAGCTGCTCGAGTTCTTCAGGCAGTTTGGGG AGGTTGAGGATGGTCCTCTTGGGCTTGATAAGCAGACGGGGAAGCCTAAAGGGTTTGCACTTTTCGTGTATAAATCGGTGGATAGTGCAAAGAAGGCTCT GGAAGACCCCCAAAAGCAGTTTGAGGGACATGTTTTGTATTGCCAGAAAGCTGTTGATGGCCCTAAGGGGAAACAAGGATATCATCAGCAACCACATCAC CAACAGCACCAGCATCATTCCCACCATCATCACCAGCCCCACTATCAAAGGAAGGAGAGGAACAAGTATACTTCTGGTGGACCTGCACATGGTGGGGGGC ACTTGATGGCACCATCAGGTCCTCCTGTTGGATACAATCCCGGAGTGCCGGGGGCTCAAGGGTTGAATCCTGTGCTTGGTCAGGCGATATCGGCTTTGCT TACAACCCAAGGAGCTGGGTTGGGACTTGGGAACTTTCTTGGAGGTCTTGGTGGTGCACCTTTGAATCAGTCTGTTCCACCTGCTGGGTATGGTAACCAG CCTGCTATGAACTATGGGAACCAGCAGGGGATGCAGCAGGGTTACCCGAATCCTCAGATGGGACAGGGCAGTGGTGTTAGGCCTCACCCTGGTGCTGGCG CCCCTTACATGGGTCATTAGGTGAGTGACTTTTACTTATATCATATGCCTTATTGTTTATTAATCAATATGTTGCTGAATCTTATCACAATTGTATGATC ATTCTTATTTTAACAATCTAATATTATGTGAAGAGTTGTCGTTTTTTAAAATGAGGTTGTTAAAGGTTCAATGTTGGAAATGTATAATATGGAGTTATTA ATATATACTGGATAAGTATTAAAAATCATAAACCTAATGTCTCACAGTCCATGATAGACAGAAGCAATTCATGTGTGTTTGCTTGCATTAAATGAGTTTT TGGATTCTGCATTGAATTGTGTTACCATGTTCTTATCACCCCAGTCCACACTCATAGCTTCGTTTTGTTCATCAATTATGACATGATGAATGAGTCTGGT CAGACTTTACTTATTATTATTACTGTCCAGTTTGATGAGTCATTACTTTTTTGTTTTGCTTTTCTTGTTTGATTGCTGTAATATGGTCAGCCTTATTTGC ACCTTTATATTAGGCTTGCATACTCACCCATATCTTAATGATAAATTGTCATAAAATAGAAATCATTTGAAAGTCAATAATTGCTTTGATATTGGGATGA AGCAAGATGCTATAATTCATAATTATTCATACACTTTCCCAAGCTCTATACTCATCCCGCTTCTTTGTGATAACATCATCAATCTTGCATTTCATATCTC CTTTACCATCTCTCGTCCTTACGCCTTTTCCAATTCTCTGTTTTTAATTAGTAAACAATTATTATGGTTGAGTTTATAGATTGAAACAATTTTAACTCTT GGAAACCTATTTTCCAGTATCAGAGGTATGTCTTTTAAGACTTCATATTTCTGTGGTTCTTCCAGAGATTTTTTTTTTAAATTAGTCTTTTTACAATGTA TGTATTCATTGTGCAGATATCTTCATAGATGCATCAATCATTTAGTTTTGGACTGAGCTGATTCTTCTGAAGTACCAGACAATATTCAAATGCATATTTT AAATTTGTAATGAATTTGC BLAST |
| Tissue | pods |
| Gene name | LI_gene_184592; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_288071
| Blastp | UBP1-associated protein 2B from Arabidopsis with 49.9% of identity |
|---|---|
| Blastx | UBP1-associated protein 2A from Arabidopsis with 64.44% of identity |
| Eggnog | Rna-binding protein(COG0724) |
| Kegg | Link to kegg annotations (AT2G41060) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019461443.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |