Id Trinity | TRINITY_DN51411_c0_g1_i10 |
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Name Transcript | Ll_transcript_380060 |
Sequence | CTTAGTGTTGCCATAAAAACCGTGTCTGGTGTCTAGAATTAACGTTTTCTTTTCATATTTTATTATTTATTATTTTCTTTTATACATTTAGAAACGCAGT TTTTATTGAAAAAGCTCTGCTTTATTATTTTCTTTTATCCATTTATAGACTCAGATTTTTATTTAAAAAAATAATCTCAGCTTGTTTCTAAATACACTGC ACTTTCATTTTACACACAACAAACAAAATCACTTAACAAATCAGCTTCTGTATCCTTCAGCATCATCCTCTTTCTCTCTCTACAAAAAATTCTCTCTTTT GCACAGAATCTAGGGTTTTTGAACAGTGAATCTTCACCATCACTAAAGAATCTATCACCCCTTTCTGCTCCACATCAAGTTTAGGAGAGAATGTGATTTA TCTCACTTCCATTGCAAAAAAGGGGCAAACTAATCTTCCAGTGGCATGGCAACTGAGAGTCCAATTAGAATCTCAAAAACTAGTGGTAAATGGCCCTCTC TTACGCAAGCTGCAACTTACGGTCCACCATCTCATAATATGGCGACAGAGGATTTGGGTGTACTTTTGAAGGGCCCTAGGTTCCGCGGCAGTGGAAAGAT CGTGGCACCAAATCGCAGCGGCAGTGCACCTCCTAGCATGGAAGGCTCATTTCATGCCATAGAAAACCTGTTATCCCAGCAGAACACCACCCAGAATGCA AGCCTTGCAACTCTAAACAAAGCTATGCAGAAATGTGAGTCTGAAGAACAATTACGAGCTGATCCAGCTTATTTGGCATATTACAGTTCTCATGTCAACC TAAACCCTAGACTTCCTCCCCCACTAATCTCCCGGGAAAATCGTCATATGGGACATCATATTAGTAGTTTTAACAATAATTGGGGATCACCTTTTGCAGA TGATAGCAGTAGAAGTTCTACACATTTGTCCCAATGGACTCTTGCAACACACAAGGAGGAGTCTGAGGATGAATCACCCCAACAGCCATATGATAATGAG TCAGTTAAGACAAGTGACATATGGCCTAGACCGGATGAAGCTTCATCGGCATCTCAGCACAAAAATGTGGTTGATTTAATTCAGGAAGATTTTCCCCGTA CAGTGTCCCCGGTATATAATAAGTCTCTTTCCATAAGTCGCGGACTCGTGGATGAACCAATTGACTTAGGTGCTGGTTCCACTTCTTCTCATGATCCTCC TGTCACTACAGCAGAGGCTGCTAAACCTGCTGGAGGTGCAGATGAAAGAAGTGTTTTACCAACTGTTGATTCTCATGCCCCTGTTGCAAGCTCATCATCT ATTGAATCCACAGGCAGCGTGGGTTTTAGTGACATAGATGTTACGGCTGTTGAGTCTCAGCTAAAGGCTCTTAGTGTATCTAATATACCAAATTTAGAAA GCATGAGTAATGAAGAAAAATGGAAGACCAGCTACCAGAGTAATTTGATGCAACACCAGAAATACCACCAACAAAACAATAAATATGAAACACCTGACGC CAATTCTCAAAGTGTAAATTCTGCCTATGTTGGTAGGGAACAGTTTCCTCGTAATTCCAGCAAGTTCTCTGATGTCCAACCAGTGCTGCAGTCATCTGGG ATTACACCTCCACTATATGCCACTGCGGCTTATATGACCTCAGCAAATCCATACTATGCTAATTTGCATGCCTCGGGCATATATACTCCACAATATGTTG GTGGATACACCTTAAATCCCACAGCTATTCCTTCATATATTACTGCATATCCGCCTCATGGTGCCGTACCACTTGCTGTCGATGGGGCTGCTAGTTCTAG TTATACTCCCCTACCACCAGGGGTTTCAACCAGGGGAAGCGTTTCATATGGAGCTGAAATGGTACACGCAAACAAGTTCCCTGGACACTTTGGATTTCCT ATGCAGCCTTCTTTTGGTGATCCTTTTTACATGCAATGTCATCAGCAACCTTTTGTGGAGGGGTATGGTATTCCTGGTCGTTTTGATCCACTGGCACCTA GACCAAGTGGTGGTAGCCAAATTAGTCCCTTTGATTCGCAGAAAAGTCCCAGTACTGGTGCTTATTCGGATGATAAAATATTGCATGATCAGAGAGCCAG TATTAATATGAATTCAAGAAGAGGAGGATTAACAATTCCTAGTTATCATGGACACCCGCCAAACATGGGTTTTGTAATGCAGTATCCAAGTTCACCACGT CCTAGTCCACGTCTGTCAGGATACCCAGAAGCAAGTCCCGCCCTTCAAGGACGGAGGAGTGAAATGAAACCTTTGCCAGCTTCTGGTAGAAATATAGGTG TATTAATTGGATGGCAAGGCCAGAGATACCTTGACAGTACTCGTGACCCCAAAATTGTTAATTTTCTCGAGGAATTAAAATCTGGCAAAGGTCGCAGATT TGAGCTATCTGATATTATTGGTCATATTGTTGAATTTAGCGCTGATCAGCACGGTAGTCGATTTATACAGCAAAAGTTGGAATGTTGTGGTGTTGAAGAG AAGGCATTGGTGTTCAAAGAAGTTCTCCCACATGCTTCAAAATTAATTACTGATGTATTTGGTAATTATGTAATACAGAAGTTTTTTGAGTATGGAAGCC CTGAGCAGAGGAGAGAACTTGCAAATCAGTTGGCTGGTCAGATACTTACTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGT TATTGAGCTTGAACAGAAAGCTCAGCTTGTTCGTGAGCTAGATGGAAATGTAATGAAATGCGTTCGTGACCAAAATGGGAATCATGTAATACAGAAGTGC ATTGAATCTATTCCAACCAAACAAATTGGCTTCATAATATCTGCATTTCGTGGTCAAGTTTCTAATTTATCAATGCATCCTTATGGTTGCCGAGTCATAC AGAGAGTTCTAGAGCATTGCACAGACGAGGTTCAATGTCAGTTTATTGTGGATGAGATATTGGAGTCAGTTTGTTCTCTTGCTCAGGACCAATACGGTAA TTATGTTACCCAGCACGTGTTGGAGAGAGGAAATCATCAGGAAAGGAGCCAAATCATTAGCAAGCTGTCAGGACATGTTGTTCAGTTAAGTCAGCATAAA TTTGCGTCAAATGTTGTCGAGAAATGTTTGGAGTATGGTGATGTCAATGAACGGGAGCTGTTGATTGCAGAGATTGTTGGGCAAGATGAACAGGACGATA ATTTATTGACAATGATGAAAGACCAATTTGCAAATTATGTGGTCCAGAAGGTTTTCGATATGTGTTCTGAAAATCAGCGAGCAAAGTTGCTTTCTTGCAT AAGAATTCATGCTCATGCTTTGAAGAAATACACTTACGGAAAACACATCGTATCTCGGTTGGAACAGCAATTTGGAGATGAAAATCCAACACCTGGAGCA TAATAGCAATGTGGATTATACACATGTAAGTGCTGCTGTGGCATGCAAAACTCGAGCATATATGTTTTTCTGATGATGATATTGATCTTTGAAACTGCTG ATGAATAAACCATTATTACTACTCATGTGACTTCATAACTAGACCTTGATAGCTTCGGGAGCACATATGTTGTCCCATAAATTGTGCCAGTGTATGTACC ATCTGTGTGACAGATTGGTTGAAAAAATGTTTAGTTAAAAAGTTAATAATTAACTATTTTCCTGACCAATACAGCCAGCTGGCACATACAGTGGGACAAC TTACGGCAGCAGATATGTACTGGATAGCTACCAAATTAATGTCTTTAGGAAACAATTAGTGTATGTACATCTATAGTGTGGAACTCAATGTAATTATGTG ATTTTGAATAATTGATTGGAAATATTGTTTCTGTATAGTTGTTTGGAAGGGAACTCTTGTTTATGTAAGATTTATTATTGGATCTTCTCTGCCTAGTGCT TAGTGTGTGGTTTCGTTTGGTGTTTCCATTGTCCTTATGATTGCATGTTGTTTTGATTTCTTCC BLAST |
Tissue | pods |
Gene name | LI_gene_184743; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_380060
Blastp | Pumilio homolog 5 from Arabidopsis with 44.65% of identity |
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Blastx | Pumilio homolog 6, chloroplastic from Arabidopsis with 46.13% of identity |
Eggnog | pumilio homolog(COG5099) |
Kegg | Link to kegg annotations (AT3G20250) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019439368.1) |
Pfam | Pumilio-family RNA binding repeat (PF00806.18) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |