Ll_transcript_380053

• Id Trinity: TRINITY_DN51411_c0_g1_i3
• Name Transcript: Ll_transcript_380053
• Sequence: TAATCACTTAACACATCAACTTCGGTATTATTCAACATCATTCTCTTTCTCTCTCCTCTCTACAAAGAAATTTCTTCTATGAACAGAATCTAGGGTTTTT TATGGAACACTGAATCTTCATCACAGCACAAGAATCTCTCACTCCTTTCATCCCCACGTGAAGTTTAGGAGAGATTGTGATAATTCTCACTTCCGTTAGG TTAGAAGGGGAAAGCAAATCTTCTGGTGGTATGGCAACTGAGAGTCCAATTAGAATCTCTGAAGCTGGAGGTAAATGATCCTCTCTTAAAGAAGCTGCAA CTTTTGGTCAACCATCTCATAACATGGCAACAGAAGATTTGGGTATACTTTTGAAGGGCCATAAGTTCCATGGCACTGGAAAGGTTGTAGCACCCAATCG CAGTGGCAGCGCACCTCCCAGCATGGAAGGCTCGTTTCATGCTATAGAAAACCTGTTATCCCAGCAGAGCTCCACCCAGAATGCAAGCCTTGCAACTCTA AACAGAGCTATGCAAAAATGTGAGTCTGAAGAAGAATTACGAGCTGATCCGGCTTATTTGGCATACTACAGTTCTCATGTCAACCTAAACCCTAGACTTC CTCCCCCACTAATCTCCCGGGAAAATCGCCATATACGACATCATAATAGTGGTTTTAGCAATAATTGGGGATTGTCTTTTGCAGATGATAGCAAAAGTTC TTTGCAATTGTCCCAATGGACTCTTGCAACGCACAAGGAGGAGTCTGATGATGATTCACTCCAACAGCCATATGATAATGAGTTAGTTAAGACAAGTGAA ATGTGGCGTAGGCCGGATGCAGCTTCATCAACATCTCAGCACAAAAATGTGGTTGATTTAATTCAGGAAGATTTCCCACGAACAATGTCACCTGTATATA ATAAGTCTTTTTCTGTAAGTCATGCACTGGTGGATGAACCGATTGGCTCAGATTCTGGTTCCACTTCTTCTCATGACCCTCCTGTCAGTACAGCCGAGGC TGCTAAATCTGCCGGAGGTTCAGATGATACAAGGGTTTCATCAACTGTTGATTCCCATGCCCCAGTTGCAAGCTCATTATCTATTGAATCCACAGGCAGC GTAGGTTTTAGTGACATAGATGTTACAACTGTTGAGTCTCAGCTAAAGGCTCTTAGCATATCTAATCTACCAAATTCAAAAAGCCCGAGTAATGAAGAAA AATGGAAGACCAACTATCAGAATAATTTGATGCAACACCAGATATACCAGCAACAAAACAATCCATATGAAGTTCATAATGCCAGTTCTCAAAGTGTAAA TTATGCCTATATTGGTAGGGAACAGTTTCCTCATAATTCCAGCAAGTTCTCTGATGTCCAACCAGTACTTCAGTCATCCGGGTTTACACCCCCACTATAT GCCACGGCAGCTTATATGACCTCAGCAAATCCGTACTACATGAATTTTCAGGCCTCGGGCATATATACTCCACAATATGTTGGTGGATACACCTTAAATC CCACAGCTATTCCTTCATATATTACTGCATATCCGCCTCAGAGTGCGGTGCCACTTGTTGATGGGGCCACTAGTTCCAGTTATACTCCACTACCACCCGG GGTTTCATCCGGGGGAAGCATTTCTCATGGAGCTGAAATGGTACATGCAAACAAGTTCCCTGGGCAATTTGGATTTCCTCTGCAGTCTTCTTTCGGTGAT CCTTTTTACATGCAATATCATCAGCAGCCTTTTGTGGAGGGGTATGGTATTTCAGGGCATTTTGATCCCCTGGCACCTAGACCAAGTGGTGGTAGCCAAA TTAGTCCTTTTGATTCGCAAGAAATGGCCAGTACAGGTGCTTATTTGGATGATAAAATATTGCATGACCAGAGAACCATTGCTAATATGAACGTAAGAAA ACGAGGATTTACTATTCCTAGTTATTATGGAAACTCGCCAAGCATGGGTTTGGTAATGCAGTATCCAAGTTCACCACTTCCTAGTCCAGTTCTGTCAGGA TATCCAGAAGGAAGTTCTGGCCTTCCTGAAGGAAGGAGTGACATGAAACTTTCCCCAGCTTCTAGTAGAAATACAGGTGTATTATCTGGATGGCAAGCGC AGAGATACTTTGACAGTACTCATGACCCGAAAATTGTTAATTTTCTTGAGGAGTTAAAATCTGGCAAAGGTCGAAGATTTGAGCTATCTGATATTATTGG ACATATTGTTGAATTTAGTGCTGATCAGCATGGTAGTCGATTTATACAGCAAAAGTTGGAATGTTGTGGTGTTGAAGAGAAGGCATTGGTGTTCAAAGAA GTTCTTCCACATACTTCAAAATTAATGACTGATGTATTTGGTAACTACGTAATACAAAAGTTTTTCGAGTATGGAAGCCCTGGGCAGAGGAGGGAGCTTG CAAATCGGTTGGCTGGTCAGATACTTCCTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGC TCAGCTTGTTCGTGAGCTAGATGGAAATGTAATGAAATGCGTTCGTGACCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACCAAA CAAATTGGCTTCATAATATCTGCATTTCGTGGTCAAGTTTCTAATTTATCAATGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTCTAGAGCATTGCA CAGACGAGGTTCAATGTCAGTTTATTGTGGATGAGATATTGGAGTCAGTTTGTTCTCTTGCTCAGGACCAATACGGTAATTATGTTACCCAGCACGTGTT GGAGAGAGGAAATCATCAGGAAAGGAGCCAAATCATTAGCAAGCTGTCAGGACATGTTGTTCAGTTAAGTCAGCATAAATTTGCGTCAAATGTTGTCGAG AAATGTTTGGAGTATGGTGATGTCAATGAACGGGAGCTGTTGATTGCAGAGATTGTTGGGCAAGATGAACAGGACGATAATTTATTGACAATGATGAAAG ACCAATTTGCAAATTATGTGGTCCAGAAGGTTTTCGATATGTGTTCTGAAAATCAGCGAGCAAAGTTGCTTTCTTGCATAAGAATTCATGCTCATGCTTT GAAGAAATACACTTACGGAAAACACATCGTATCTCGGTTGGAACAGCAATTTGGAGATGGTATGTATAAGAATTCTTCTGATGATGATGTGTATATATAA TTGGGCAGAAAATCCAACACCTGGAGCATAATAGCAATGTGGATTATACACATCCAGCTGGCACATACAGTGGGACAACTTACGGCAGCAGATATGTACT GGATAGCTACCAAATTAATGTCTTTAGGAAACAATTAGTGTATGTACATCTATAGTGTGGAACTCAATGTAATTATGTGATTTTGAATAATTGATTGGAA ATATTGTTTCTGTATAGTTGTTTGGAAGGGAACTCTTGTTTATGTAAGATTTATTATTGGATCTTCTCTGCCTAGTGCTTAGTGTGTGGTTTCGTTTGGT GTTTCCATTGTCCTTATGATTGCATGTTGTTTTGATTTCTTCC
• Tissue: pods
• Gene name: LI_gene_184743;
• Additional information: details;

Expression of Ll_transcript_380053

FPKM

• PAB: 0.5
• PNAB: 1.2
• PS1: 1
• PS2: 0.2
• PS3: 0.3
• PW1: 1.7
• PW2: 0.6
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_380053

• Blastp: Pumilio homolog 5 from Arabidopsis with 45.95% of identity
• Blastx: Pumilio homolog 6, chloroplastic from Arabidopsis with 47.22% of identity
• Eggnog: pumilio homolog(COG5099)
• Kegg: Link to kegg annotations (AT3G20250)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019431512.1)
• Pfam: Pumilio-family RNA binding repeat (PF00806.18)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;