| Id Trinity | TRINITY_DN51411_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_380055 |
| Sequence | AGAAAACCTGTTATCCCAGCAGAACACCACCCAGAATGCAAGCCTTGCAACTCTAAACAAAGCTATGCAGAAATATGATAGCAGTAGAAGTTCTACACAT TTGTCCCAATGGACTCTTGCAACACACAAGGAGGAGTCTGAGGATGAATCACCCCAACAGCCATATGATAATGAGTCAGTTAAGACAAGTGACATATGGC CTAGACCGGATGAAGCTTCATCGGCATCTCAGCACAAAAATGTGGTTGATTTAATTCAGGAAGATTTTCCCCGTACAGTGTCCCCGGTATATAATAAGTC TCTTTCCATAAGTCGCGGACTCGTGGATGAACCAATTGACTTAGGTGCTGGTTCCACTTCTTCTCATGATCCTCCTGTCACTACAGCAGAGGCTGCTAAA CCTGCTGGAGGTGCAGATGAAAGAAGTGTTTTACCAACTGTTGATTCTCATGCCCCTGTTGCAAGCTCATCATCTATTGAATCCACAGGCAGCGTGGGTT TTAGTGACATAGATGTTACGGCTGTTGAGTCTCAGCTAAAGGCTCTTAGTGTATCTAATATACCAAATTTAGAAAGCATGAGTAATGAAGAAAAATGGAA GACCAGCTACCAGAGTAATTTGATGCAACACCAGAAATACCACCAACAAAACAATAAATATGAAACACCTGACGCCAATTCTCAAAGTGTAAATTCTGCC TATGTTGGTAGGGAACAGTTTCCTCGTAATTCCAGCAAGTTCTCTGATGTCCAACCAGTGCTGCAGTCATCTGGGATTACACCTCCACTATATGCCACTG CGGCTTATATGACCTCAGCAAATCCATACTATGCTAATTTGCATGCCTCGGGCATATATACTCCACAATATGTTGGTGGATACACCTTAAATCCCACAGC TATTCCTTCATATATTACTGCATATCCGCCTCATGGTGCCGTACCACTTGCTGTCGATGGGGCTGCTAGTTCTAGTTATACTCCCCTACCACCAGGGGTT TCAACCAGGGGAAGCGTTTCATATGGAGCTGAAATGGTACACGCAAACAAGTTCCCTGGACACTTTGGATTTCCTATGCAGCCTTCTTTTGGTGATCCTT TTTACATGCAATGTCATCAGCAACCTTTTGTGGAGGGGTATGGTATTCCTGGTCGTTTTGATCCACTGGCACCTAGACCAAGTGGTGGTAGCCAAATTAG TCCCTTTGATTCGCAGAAAAGTCCCAGTACTGGTGCTTATTCGGATGATAAAATATTGCATGATCAGAGAGCCAGTATTAATATGAATTCAAGAAGAGGA GGATTAACAATTCCTAGTTATCATGGACACCCGCCAAACATGGGTTTTGTAATGCAGTATCCAAGTTCACCACGTCCTAGTCCACGTCTGTCAGGATACC CAGAAGCAAGTCCCGCCCTTCAAGGACGGAGGAGTGAAATGAAACCTTTGCCAGCTTCTGGTAGAAATATAGGTGTATTAATTGGATGGCAAGGCCAGAG ATACCTTGACAGTACTCGTGACCCCAAAATTGTTAATTTTCTCGAGGAATTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGATATTATTGGTCAT ATTGTTGAATTTAGCGCTGATCAGCACGGTAGTCGATTTATACAGCAAAAGTTGGAATGTTGTGGTGTTGAAGAGAAGGCATTGGTGTTCAAAGAAGTTC TCCCACATGCTTCAAAATTAATTACTGATGTATTTGGTAATTATGTAATACAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAGAGAACTTGCAAA TCAGTTGGCTGGTCAGATACTTACTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGATCATAGGTAGCCATTGGTAGAGCTGAGGTTTTCAA AACTGGCATTCTAAGAATGAGTTGTCTAACCTGGTTTGCTTTTTGCTGCACCCACCAGCACCTGGGGTAGGATTTTACGAAATCTGGTTTACATTTAGTA TCAACTACCTTATTGTTTTTACC BLAST |
| Tissue | pods |
| Gene name | LI_gene_184743; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_380055
| Blastp | Pumilio homolog 6, chloroplastic from Arabidopsis with 40.81% of identity |
|---|---|
| Blastx | Pumilio homolog 6, chloroplastic from Arabidopsis with 41% of identity |
| Eggnog | pumilio homolog(COG5099) |
| Kegg | Link to kegg annotations (AT4G25880) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019439368.1) |
| Pfam | Pumilio-family RNA binding repeat (PF00806.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |