Ll_transcript_381524

• Id Trinity: TRINITY_DN51416_c5_g2_i3
• Name Transcript: Ll_transcript_381524
• Sequence: ACGCAATGATCGCATGATGCCATTTCTCTCTGTTCCGTTTCATTAATTACTATTATTTTTTCCAATTCTCTCAACTCTTCTAATTCCTTTCCTTTCTTTT CCTTTTCCTTTCCCTTCCTTTCAATTCCATTTCCCAAACAATAACTCATTCTCCCAAAACCCTCTCTCCCCACCACCATGGGCAACATCTCCACCACCAA CGGCGCCTCCCACCGTCGCCGAATCTCCAACTCCGCCAGACGGACCACCCACCCTCTCCCACCTCCTCCTCTCATACCGCACCCCGATATCACCGCCCAT CAATTCCTCTACCCTGGCCCTTCGCAATCACAATACCCGCACCCTAACCCTAACGCTCCGATTCATTACCCTCAGCCGCAGTACCAATACCCCGGCGGGT ACTATCCTCCGCCGCCGCCGCCGATGCCACATCACCATCCTCCGCACTATCCGTACCCGCCTATGCCTCCGCCTGCGCCTTATGTGGAGCATCAGAGAGC GGTTACGATAAGGAACGATGTTAATGTTAAGAAGGAGACGCTTCAGATTGAGCCTGATGATGATAATTCTGGAAGATTCCTTGTCAATTTTACGTTTGAT GCTACCGTTTCTGGAAGCATCACCATATATTTCTTTGCAAAAGAAGGTGAAGGCTGTAACCTCACACCAATGAAGGAAACCCATATTGCACCAGTGACTG TGCATTTTGAGAAAGGACTTGGCCAGAAGTTTAGACAGCCAGCTGGAACTGGTATTGATTTCTCAATGTTTGAGGAGTCAGAGTTATTGAAAGTGGCTGA CTTGGATGTCTATCCTCTAGCAGTGAAGGCAGATGCATCATCCAGTAATCATGATGAATCAAATGAAACTCCAACTCCTGGTAACAGTAACACAAATTCT CAGATAACCCAAGCAGTGTTTGTGAAGGATAAAGGAGAATTTCGGGTGAAAGTTATTAAGCAGATTTTGTCAGTAAATGGAATGAGATATGAGCTACAGG AGATATATGGTATCGGGAATTCAATGGAGAGTGATGTGGATGAGAATGAGCAAGGAAAGGAGTGTGTCATCTGCTTATCAGAGCCTCGGGACACCATTGT CCATCCTTGCCGACATATGTGCATGTGCAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAATTGAGAGGCTT TTGGAGATAAAGGTAGGATCTGAGGAGTGAAGAGGATACATTGTTAATGTCACAAGCTTCCTGTAAAGTTTAACTGTTATACTATAATTAATACTTATTT CTCTTCATGGTTTCCACCTTATTTTTCTGGGTTTTCCAATAATCAGAAAGACAAAAAAGAAAAATGGAATATATATTTTTGACATGGTGGTTTAACATGA ATGAACAACATGCTGACATTGCACCTGACCTATATAAGACAATGCCTCCACCGAGCTTGTTTGTAGCTTATAAATTGCACAAGCTTCTCAATATAGTTTA CTTGGGATGATATTATTTTTATCTTTTTGAACATGTGTGCTTTTTAACTTTTGAAGGATTGACTTTGTGACCATTACTTTGTCATGGCTGTTATATGAAC AAGTGGCACAGTACAAATAAAGTGGGTATGTTAGGTATTCCAGGGTTACTTGGGTAAAGGGAAAGGATGATAGGGGAATAGAAAATAAAGGGGAGAGGTG TAGGAAGTGAGAGAGTTTGTTAGTGAGTTGGATTTTGGATGAGAATGAAGGGCAAAGGAAGACTCAGAGCATCTCACAAATGTATTTCATGGCTCTCATG TCTTTCCTTTCATTTCCCTCCAAAATCTAACTTCCAAATTAATCCTTATTTATACTA
• Tissue: pods
• Gene name: LI_gene_184771;
• Additional information: details;

Expression of Ll_transcript_381524

FPKM

• PAB: 9.8
• PNAB: 4.8
• PS1: 7.4
• PS2: 5
• PS3: 5.9
• PW1: 3.6
• PW2: 5.7
• PW3: 5.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_381524

• Blastp: Probable E3 ubiquitin-protein ligase LOG2 from Arabidopsis with 66.67% of identity
• Blastx: Probable E3 ubiquitin-protein ligase LOG2 from Arabidopsis with 67.87% of identity
• Eggnog: RING finger(ENOG410XRAE)
• Kegg: Link to kegg annotations (AT3G09770)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019444347.1)
• Pfam: Zinc finger, C3HC4 type (RING finger) (PF13920.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;