| Id Trinity | TRINITY_DN51416_c5_g2_i8 |
|---|---|
| Name Transcript | Ll_transcript_381535 |
| Sequence | ACGCAATGATCGCATGATGCCATTTCTCTCTGTTCCGTTTCATTAATTACTATTATTTTTTCCAATTCTCTCAACTCTTCTAATTCCTTTCCTTTCTTTT CCTTTTCCTTTCCCTTCCTTTCAATTCCATTTCCCAAACAATAACTCATTCTCCCAAAACCCTCTCTCCCCACCACCATGGGCAACATCTCCACCACCAA CGGCGCCTCCCACCGTCGCCGAATCTCCAACTCCGCCAGACGGACCACCCACCCTCTCCCACCTCCTCCTCTCATACCGCACCCCGATATCACCGCCCAT CAATTCCTCTACCCTGGCCCTTCGCAATCACAATACCCGCACCCTAACCCTAACGCTCCGATTCATTACCCTCAGCCGCAGTACCAATACCCCGGCGGGT ACTATCCTCCGCCGCCGCCGCCGATGCCACATCACCATCCTCCGCACTATCCGTACCCGCCTATGCCTCCGCCTGCGCCTTATGTGGAGCATCAGAGAGC GGTTACGATAAGGAACGATGTTAATGTTAAGAAGGAGACGCTTCAGATTGAGCCTGATGATGATAATTCTGGAAGATTCCTTGTCAATTTTACGTTTGAT GCTACCGTTTCTGGAAGATCACGACTAAGGCAGTAGAAGAAAAAGTGGCTTCTTTATTAAAAGCATCACCATATATTTCTTTGCAAAAGAAGGTGAAGGC TGTAACCTCACACCAATGAAGGAAACCCATATTGCACCAGTGACTGTGCATTTTGAGAAAGGACTTGGCCAGAAGTTTAGACAGCCAGCTGGAACTGGTA TTGATTTCTCAATGTTTGAGGAGTCAGAGTTATTGAAAGTGGCTGACTTGGATGTCTATCCTCTAGCAGTGAAGGCAGATGCATCATCCAGTAATCATGA TGAATCAAATGAAACTCCAACTCCTGGTAACAGTAACACAAATTCTCAGATAACCCAAGCAGTGTTTGTGAAGGATAAAGGAGAATTTCGGGTGAAAGTT ATTAAGCAGATTTTGTCAGTAAATGGAATGAGATATGAGCTACAGGAGATATATGGTATCGGGAATTCAATGGAGAGTGATGTGGATGAGAATGAGCAAG GAAAGGAGTGTGTCATCTGCTTATCAGAGCCTCGGGACACCATTGTCCATCCTTGCCGACATATGTGCATGTGCAGCGGATGTGCAAAGGTTTTGAGGTT CCAGACAAATAGATGCCCAATTTGCAGACAACCAATTGAGAGGCTTTTGGAGATAAAGGTAGGATCTGAGGAGTGAAGAGGATACATTGTTAATGTCACA AGCTTCCTGTAAAGTTTAACTGTTATACTATAATTAATACTTATTTCTCTTCATGGTTTCCACCTTATTTTTCTGGGTTTTCCAATAATCAGAAAGACAA AAAAGAAAAATGGAATATATATTTTTGACATGGTGGTTTAACATGAATGAACAACATGCTGACATTGCACCTGACCTATATAAGACAATGCCTCCACCGA GCTTGTTTGTAGCTTATAAATTGCACAAGCTTCTCAATATAGTTTACTTGGGATGATATTATTTTTATCTTTTTGAACATGTGTGCTTTTTAACTTTTGA AGGATTGACTTTGTGACCATTACTTTGTCATGGCTGTTATATGAACAAGTGGCACAGTACAAATAAAGTGGGTATGTTAGGTATTCCAGGGTTACTTGGG TAAAGGGAAAGGATGATAGGGGAATAGAAAATAAAGGGGAGAGGTGTAGGAAGTGAGAGAGTTTGTTAGTGAGTTGGATTTTGGATGAGAATGAAGGGCA AAGGAAGACTCAGAGCATCTCACAAATGTATTTCATGGCTCTCATGTCTTTCCTTTCATTTCCCTCCAAAATCTAACTTCCAAATTAATCCTTATTTATA CTA BLAST |
| Tissue | pods |
| Gene name | LI_gene_184771; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_381535
| Blastp | Probable E3 ubiquitin-protein ligase LOG2 from Arabidopsis with 66.13% of identity |
|---|---|
| Blastx | Probable E3 ubiquitin-protein ligase LOG2 from Arabidopsis with 65.2% of identity |
| Eggnog | RING finger(ENOG410XRAE) |
| Kegg | Link to kegg annotations (AT3G09770) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019444347.1) |
| Pfam | Zinc finger, C3HC4 type (RING finger) (PF13920.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |