Ll_transcript_379858

• Id Trinity: TRINITY_DN51442_c2_g1_i1
• Name Transcript: Ll_transcript_379858
• Sequence: CCATGTCCACCACAACACTTCACTCCACTTATCATCTCAAACTCACCGATTCAACTCGCCCTCACACCACTCGCAAACGCAAACCGAACGAGTTACCATT CAAGGAGACTCAGCAAGGTTTCGTCGACTACGACAATGGCCACCACGACGTTTCCAACAAGGTCACCGGAATCCTCAAGGACGGAATTCCCGCCCGGTAC CGAATCCGAGTCGCCGGAAACCGATTCCAGAAGGATTGGACCGTTTCTGAGGTCGTTGAATTGGTTCTCAGCCTCGACCTTAGTGATGATATTGACGGTT TATTGAACCGATGGGTTGGACGCTTCGCACGCAAGAATTTCCCTTACCTTATTAAGGAGTTGAGTCAGAGAGGGAATATTGAACATTGTAACCGCGTTTT CGAGTGGATGAAGAAGCAAAGGAATTACTGTGCTCGGAATGATATATACAATATGATGATAAGGTTGCATGCAAGGCATAATCGAGTAGACCAGGCACGT GGCTTATTTTTTGAGATGCAAAAGTGGAGGTGCAAGCCTGATGTTGAGACTTACAATGCAATTATCAATGCACATGGTCGAGCTGGACAATGGCGTTGGG CTAAGAATATCATGGAAGACATGCTACGTGCAGCTGTGTGTACTCTATAGCACCAAGTCGGTCAACGTATAACAACTTGATAAATGCATGTGGATCTAGT GGAAATTGGAAAGAAGCTCTTAATATTTGCAAGAAAATGACAGACAATGGAGTTGGGCCTGATCTTGTTACTCACAATATTGTGTTATCTGCATTTAAAA GTGGGGCTCAATATTCCAAAGCTCTGTCTTATTTTGAACTAATGAAGGGAACTCATATTCGTCCAGACACAACTACGCTTAATATCATCATCCATTGTCT GGTGAAGCTTGGACAATATGACAAAGCCATTGATATTTTTAATTCCATGAGGGAAAAGAAGTCAGAATGCCACCCTGATGTTGTAACTTTCACTAGTATC ATCCACTTGTATTCTGTATGTGGGCAAGTTGAAAACTGTGGGGCTGCGTTCAGTATGATCCTTGCAGAAGGGCTGAAACCAAATATAGTCTCATATAATG CACTAATAGGTGCGTATGCTGCTCGTGGGATGGACAAGGAAGCATTTTCTGTTTTCAGTGAAATAAATCAGAATGGTTTACGCCCAGATATTGTATCCTA TACATCTCTGCTTAATGCTTATGGAAGATCACAAAAGCCCCAAAAAGCAAGGGAAGTATTTGAAATGATAAAGAGGAAAAAGTTGAAGCCAAACGTTGTC AGCTACAATGCACTGATTGATGCCTATGGATCTAATGATTTGTTGGCTGAGGCAATTGAAATCTTGCGTGAGATGGAGCAAGATGGTATTTATCCAAATG TGGTCTCAATATGCACTCTCTTGGCTGCCTGTGGGCGATGCAGTAAGAAGGTGAAGATTGATACAGTGCTATCAGCAGCAGAGATGCGAGGCATTAAATT GAATACATTTGCATATAATTCAGCTATAGGAAGCTATATGAATGTCGGGGAATACGACAAAGCTACAGGCTTGTATAAATCTATGAGGAAGAAGAAAATA AAACCTGATTCTGTTACCTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATATGGTGAAGCCCTATCTTTTATGGAAGAGATGATGCAATTAG AACTTCCTTTGTCCAAAGAGGTCTACTCATCTATCATATGTGCCTACAGCAAACAAGGCCAAATTGCAGAAGCAGAATCTACATTCAACTTGATGAAATC ATCTGGTTGCTACCCTGATGTGGTTACATACACTGCAATGCTTGATGCATACAATGCAGCCGAGAATTGGGAGAAAGCATATGCTCTCTTTGAAGAAATG GAAGTAAATGGCATCAAGCTAGATACAATTGCATGTGCAGCCCTAATGCGAGCTTTCAATGAAGGTGGCCAGTCTGGAAAGGTCCTTAGTCTTGCAAAGA ATATGCGAGAAAAAGAGATTCCTTTTAGTGAAACCATCTTTTTTGAGATGGTATCTGCCTGTAGCTTGTAAGTTCAAATTTGTCCCTATATCTCCAGGGA AAACATTTTAATTAAACATTAAACCTGTCATTCTCTGGTTCTTAATTTTTTACTGGATTTCGTGGAGCTTCTAAAAATATTCATCTCCATAGTGCTTCCT CTGTTAGTGTAAGTTATTGCTAATTGAGGTTGAAGTTTGTTTACTATTTTCCTAATCTAGACATGATGGCATTTTTCCACCAGATGCAAAATTCTTATGG GTTAATACTTCTCATAATTAGGTTATTACTTGCCACTTCGATTGCTGTTTAAGCAGTAGATGGCCCTTATTCTTCAAGCACAATTTGTTGAAATTTCATA TGTTTTCCTCCCATTTGATATATCTTTGTAGTCATTATTATTTTTTCACAATAATATTATGTTAAGATTTTGTTAATTTTTTTATTGGTGGAACTTCGAT TAGAATAACATATTCTGATGCTCAAAAGACTAGGCAAGAAGCATAGAGAATAGGCCCTATTACTTAAACTGCTTTGATTAGATAAGCATATTTTATGGTA TGATTTTTTTAATAGAGTTATTGTATTTTATTATTATTTCCCTGTTAAACTAAATGTGTCTTTTGGCGTAAGATTACATGATTGGAGGACAGCTGTTGAT ATGATCAAGTACATAGAGCCCTCACTTCCTGTAATTTCATCTGGATGTTTGAATTTGTTCCTGCAATTTTTAGGAAATAGCGGGAAAAATGAAACTATGT TGAAGTTATTCTACAAAATGCTTGCATCGGGTGCTGAAGTTAACTTCAATACTTATTCTATTTTATTGAAGAACCTTTTATCCTCGGGAAATTGGAGGAA ATATTTAGAGGTACTGGAATGGATGGAAGATGCAGGAATTTATCCATCAAATGGAATGTACCGCGATTTATCCTCCTTTTCGCAAAGGTGTTGTGGGGAA GAAAATGCTGCAATCATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATCAGGGAACCAAGTCTCTCCAAGCCAAACCGAATCTCCCACTCTTTGTTGAT CATCATCATGGGATGGATATTTTGCTTACCATAACACTATGTCCCATACTACTGAGAGTATTTCATCCCAGAAGTTGGAACTCAATTTATTGGATCATTT GCTATCCTTTGTAACTCACATTATGTTCCTTTGTAGATAATAGTTTCAGACTCTAATTTACTCATTTTTACTTCTTTTCACGCACTTGTAATTCACATGT ACCTATGGCTTCATGTGACATGGAACTTATGGTAGAGATTCTCGTATAATATTTGATAATAAAGTATCTCATAGTATAAGGAGATAAACTATTCCCTGCC AATAAAATTATAACATGTGTCATGTATCAACATTTTCTACAAAAATATTTCTAAAGTTAAAAAAATAGTGCACATGTCATATTTTTTGTTGGCCAAAGGA GATAAGTTATCTCCATGTTATAATATTCTTATATAATGTAATGATATATATGTATTAGTATTGATAGTGTATAAGTTTGATACATCATCAATTTATTATT TTAACTATTAAAAAA
• Tissue: pods
• Gene name: LI_gene_184979;
• Additional information: details;

Expression of Ll_transcript_379858

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0.8
• PS2: 0.4
• PS3: 0.2
• PW1: 0
• PW2: 1.5
• PW3: 2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_379858

• Blastp: Pentatricopeptide repeat-containing protein At2g41720 from Arabidopsis with 69.75% of identity
• Blastx: Pentatricopeptide repeat-containing protein At2g41720 from Arabidopsis with 70.89% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT2G41720)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434154.1)
• Pfam: Pentatricopeptide repeat domain (PF13812.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;