Id Trinity | TRINITY_DN51442_c2_g1_i10 |
---|---|
Name Transcript | Ll_transcript_379867 |
Sequence | CAAAAGTGGAGGTATACTGTTTCCTAATCAAATATCTCACGTTGTAAAAGAAAGAGGAAACACCCAAATTCTCCCCTGAGAAAAATGCAATGCAGTTTAG TCCTGAAAAATGAAAAAGCCCAACCGGGTTCTCTAGATTCTCAAATGCTGGTCAAAATAGTAATTTTAAGGACAAACTTTAGGGATACATTAATCTAGAG TATTTTGATCAGAATGTGAGATCCTTAGGGATCAAGTTGTGATTTTTCATAGGAGTAAATTGGGAATATTTTTTAAGGACAAACTTGGGTTTTTACTCTA ATTAAAGTAATTAGTAAAATTTATCTTGGATAACTAAATTTGTATAACTTCACTATGGTTGTAGTCTGCTCGGTGTGGATAGAAGTTCCAGTGGTTTGCT AATGACTTTAGATTTGTGAAGGTTAACTAATTTGTTGCTATCATTATTAATCCCTGTTAGCATATTATTTTGATATGGTTTCTTCTAGGTGCAAGCCTGA TGTTGAGACTTACAATGCAATTATCAATGCACATGGTCGAGCTGGACAATGGCGTTGGGCTAAGAATATCATGGAAGACATGCTACGTGCAGCTGTGTGT ACTCTGTATTTTTCTTCCCTAGTCAATCTTTAATAGCACCAAGTCGGTCAACGTATAACAACTTGATAAATGCATGTGGATCTAGTGGAAATTGGAAAGA AGCTCTTAATATTTGCAAGAAAATGACAGACAATGGAGTTGGGCCTGATCTTGTTACTCACAATATTGTGTTATCTGCATTTAAAAGTGGGGCTCAATAT TCCAAAGCTCTGTCTTATTTTGAACTAATGAAGGGAACTCATATTCGTCCAGACACAACTACGCTTAATATCATCATCCATTGTCTGGTGAAGCTTGGAC AATATGACAAAGCCATTGATATTTTTAATTCCATGAGGGAAAAGAAGTCAGAATGCCACCCTGATGTTGTAACTTTCACTAGTATCATCCACTTGTATTC TGTATGTGGGCAAGTTGAAAACTGTGGGGCTGCGTTCAGTATGATCCTTGCAGAAGGGCTGAAACCAAATATAGTCTCATATAATGCACTAATAGGTGCG TATGCTGCTCGTGGGATGGACAAGGAAGCATTTTCTGTTTTCAGTGAAATAAATCAGAATGGTTTACGCCCAGATATTGTATCCTATACATCTCTGCTTA ATGCTTATGGAAGATCACAAAAGCCCCAAAAAGCAAGGGAAGTATTTGAAATGATAAAGAGGAAAAAGTTGAAGCCAAACGTTGTCAGCTACAATGCACT GATTGATGCCTATGGATCTAATGATTTGTTGGCTGAGGCAATTGAAATCTTGCGTGAGATGGAGCAAGATGGTATTTATCCAAATGTGGTCTCAATATGC ACTCTCTTGGCTGCCTGTGGGCGATGCAGTAAGAAGGTGAAGATTGATACAGTGCTATCAGCAGCAGAGATGCGAGGCATTAAATTGAATACATTTGCAT ATAATTCAGCTATAGGAAGCTATATGAATGTCGGGGAATACGACAAAGCTACAGGCTTGTATAAATCTATGAGGAAGAAGAAAATAAAACCTGATTCTGT TACCTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATATGGTGAAGCCCTATCTTTTATGGAAGAGATGATGCAATTAGAACTTCCTTTGTCC AAAGAGGTCTACTCATCTATCATATGTGCCTACAGCAAACAAGGCCAAATTGCAGAAGCAGAATCTACATTCAACTTGATGAAATCATCTGGTTGCTACC CTGATGTGGTTACATACACTGCAATGCTTGATGCATACAATGCAGCCGAGAATTGGGAGAAAGCATATGCTCTCTTTGAAGAAATGGAAGTAAATGGCAT CAAGCTAGATACAATTGCATGTGCAGCCCTAATGCGAGCTTTCAATGAAGGTGGCCAGTCTGGAAAGGTCCTTAGTCTTGCAAAGAATATGCGAGAAAAA GAGATTCCTTTTAGTGAAACCATCTTTTTTGAGATGGTATCTGCCTGTAGCTTGTAAGTTCAAATTTGTCCCTATATCTCCAGGGAAAACATTTTAATTA AACATTAAACCTGTCATTCTCTGGTTCTTAATTTTTTACTGGATTTCGTGGAGCTTCTAAAAATATTCATCTCCATAGTGCTTCCTCTGTTAGTGTAAGT TATTGCTAATTGAGGTTGAAGTTTGTTTACTATTTTCCTAATCTAGACATGATGGCATTTTTCCACCAGATGCAAAATTCTTATGGGTTAATACTTCTCA TAATTAGGTTATTACTTGCCACTTCGATTGCTGTTTAAGCAGTAGATGGCCCTTATTCTTCAAGCACAATTTGTTGAAATTTCATATGTTTTCCTCCCAT TTGATATATCTTTGTAGTCATTATTATTTTTTCACAATAATATTATGTTAAGATTTTGTTAATTTTTTTATTGGTGGAACTTCGATTAGAATAACATATT CTGATGCTCAAAAGACTAGGCAAGAAGCATAGAGAATAGGCCCTATTACTTAAACTGCTTTGATTAGATAAGCATATTTTATGGTATGATTTTTTTAATA GAGTTATTGTATTTTATTATTATTTCCCTGTTAAACTAAATGTGTCTTTTGGCGTAAGATTACATGATTGGAGGACAGCTGTTGATATGATCAAGTACAT AGAGCCCTCACTTCCTGTAATTTCATCTGGATGTTTGAATTTGTTCCTGCAATTTTTAGGAAATAGCGGGAAAAATGAAACTATGTTGAAGTTATTCTAC AAAATGCTTGCATCGGGTGCTGAAGTTAACTTCAATACTTATTCTATTTTATTGAAGAACCTTTTATCCTCGGGAAATTGGAGGAAATATTTAGAGGTAC TGGAATGGATGGAAGATGCAGGAATTTATCCATCAAATGGAATGTACCGCGATTTATCCTCCTTTTCGCAAAGGTGTTGTGGGGAAGAAAATGCTGCAAT CATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATCAGGGAACCAAGTCTCTCCAAGCCAAACCGAATCTCCCACTCTTTGTTGATCATCATCATGGGAT GGATATTTTGCTTACCATAACACTATGTCCCATACTACTGAGAGTATTTCATCCCAGAAGTTGGAACTCAATTTATTGGATCATTTGCTATCCTTTGTAA CTCACATTATGTTCCTTTGTAGATAATAGTTTCAGACTCTAATTTACTCATTTTTACTTCTTTTCACGCACTTGTAATTCACATGTACCTATGGCTTCAT GTGACATGGAACTTATGGTAGAGATTCTCGTATAATATTTGATAATAAAGTATCTCATAGTATAAGGAGATAAACTATTCCCTGCCAATAAAATTATAAC ATGTGTCATGTATCAACATTTTCTACAAAAATATTTCTAAAGTTAAAAAAATAGTGCACATGTCATATTTTTTGTTGGCCAAAGGAGATAAGTTATCTCC ATGTTATAATATTCTTATATAATGTAATGATATATATGTATTAGTATTGATAGTGTATAAGTTTGATACATCATCAATTTATTATTTTAACTATTAAAAA A BLAST |
Tissue | pods |
Gene name | LI_gene_184979; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_379867
Blastp | Pentatricopeptide repeat-containing protein At2g41720 from Arabidopsis with 69.75% of identity |
---|---|
Blastx | Pentatricopeptide repeat-containing protein At2g41720 from Arabidopsis with 68.62% of identity |
Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
Kegg | Link to kegg annotations (AT2G41720) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019434154.1) |
Pfam | Pentatricopeptide repeat domain (PF13812.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |