Ll_transcript_379861

• Id Trinity: TRINITY_DN51442_c2_g1_i4
• Name Transcript: Ll_transcript_379861
• Sequence: CCATGTCCACCACAACACTTCACTCCACTTATCATCTCAAACTCACCGATTCAACTCGCCCTCACACCACTCGCAAACGCAAACCGAACGAGTTACCATT CAAGGAGACTCAGCAAGGTTTCGTCGACTACGACAATGGCCACCACGACGTTTCCAACAAGGTCACCGGAATCCTCAAGGACGGAATTCCCGCCCGGTAC CGAATCCGAGTCGCCGGAAACCGATTCCAGAAGGATTGGACCGTTTCTGAGGTCGTTGAATTGGTTCTCAGCCTCGACCTTAGTGATGATATTGACGGTT TATTGAACCGATGGGTTGGACGCTTCGCACGCAAGAATTTCCCTTACCTTATTAAGGAGTTGAGTCAGAGAGGGAATATTGAACATTGTAACCGCGTTTT CGAGTGGATGAAGAAGCAAAGGAATTACTGTGCTCGGAATGATATATACAATATGATGATAAGGTTGCATGCAAGGCATAATCGAGTAGACCAGGCACGT GGCTTATTTTTTGAGATGCAAAAGTGGAGGTGCAAGCCTGATGTTGAGACTTACAATGCAATTATCAATGCACATGGTCGAGCTGGACAATGGCGTTGGG CTAAGAATATCATGGAAGACATGCTACGTGCAGCTATAGCACCAAGTCGGTCAACGTATAACAACTTGATAAATGCATGTGGATCTAGTGGAAATTGGAA AGAAGCTCTTAATATTTGCAAGAAAATGACAGACAATGGAGTTGGGCCTGATCTTGTTACTCACAATATTGTGTTATCTGCATTTAAAAGTGGGGCTCAA TATTCCAAAGCTCTGTCTTATTTTGAACTAATGAAGGGAACTCATATTCGTCCAGACACAACTACGCTTAATATCATCATCCATTGTCTGGTGAAGCTTG GACAATATGACAAAGCCATTGATATTTTTAATTCCATGAGGGAAAAGAAGTCAGAATGCCACCCTGATGTTGTAACTTTCACTAGTATCATCCACTTGTA TTCTGTATGTGGGCAAGTTGAAAACTGTGGGGCTGCGTTCAGTATGATCCTTGCAGAAGGGCTGAAACCAAATATAGTCTCATATAATGCACTAATAGGT GCGTATGCTGCTCGTGGGATGGACAAGGAAGCATTTTCTGTTTTCAGTGAAATAAATCAGAATGGTTTACGCCCAGATATTGTATCCTATACATCTCTGC TTAATGCTTATGGAAGATCACAAAAGCCCCAAAAAGCAAGGGAAGTATTTGAAATGATAAAGAGGAAAAAGTTGAAGCCAAACGTTGTCAGCTACAATGC ACTGATTGATGCCTATGGATCTAATGATTTGTTGGCTGAGGCAATTGAAATCTTGCGTGAGATGGAGCAAGATGGTATTTATCCAAATGTGGTCTCAATA TGCACTCTCTTGGCTGCCTGTGGGCGATGCAGTAAGAAGGTGAAGATTGATACAGTGCTATCAGCAGCAGAGATGCGAGGCATTAAATTGAATACATTTG CATATAATTCAGCTATAGGAAGCTATATGAATGTCGGGGAATACGACAAAGCTACAGGCTTGTATAAATCTATGAGGAAGAAGAAAATAAAACCTGATTC TGTTACCTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATATGGTGAAGCCCTATCTTTTATGGAAGAGATGATGCAATTAGAACTTCCTTTG TCCAAAGAGGTCTACTCATCTATCATATGTGCCTACAGCAAACAAGGCCAAATTGCAGAAGCAGAATCTACATTCAACTTGATGAAATCATCTGGTTGCT ACCCTGATGTGGTTACATACACTGCAATGCTTGATGCATACAATGCAGCCGAGAATTGGGAGAAAGCATATGCTCTCTTTGAAGAAATGGAAGTAAATGG CATCAAGCTAGATACAATTGCATGTGCAGCCCTAATGCGAGCTTTCAATGAAGGTGGCCAGTCTGGAAAGGTCCTTAGTCTTGCAAAGAATATGCGAGAA AAAGAGATTCCTTTTAGTGAAACCATCTTTTTTGAGATGGTATCTGCCTGTAGCTTGTAAGTTCAAATTTGTCCCTATATCTCCAGGGAAAACATTTTAA TTAAACATTAAACCTGTCATTCTCTGGTTCTTAATTTTTTACTGGATTTCGTGGAGCTTCTAAAAATATTCATCTCCATAGTGCTTCCTCTGTTAGTGTA AGTTATTGCTAATTGAGGTTGAAGTTTGTTTACTATTTTCCTAATCTAGACATGATGGCATTTTTCCACCAGATGCAAAATTCTTATGGGTTAATACTTC TCATAATTAGGTTATTACTTGCCACTTCGATTGCTGTTTAAGCAGTAGATGGCCCTTATTCTTCAAGCACAATTTGTTGAAATTTCATATGTTTTCCTCC CATTTGATATATCTTTGTAGTCATTATTATTTTTTCACAATAATATTATGTTAAGATTTTGTTAATTTTTTTATTGGTGGAACTTCGATTAGAATAACAT ATTCTGATGCTCAAAAGACTAGGCAAGAAGCATAGAGAATAGGCCCTATTACTTAAACTGCTTTGATTAGATAAGCATATTTTATGGTATGATTTTTTTA ATAGAGTTATTGTATTTTATTATTATTTCCCTGTTAAACTAAATGTGTCTTTTGGCGTAAGATTACATGATTGGAGGACAGCTGTTGATATGATCAAGTA CATAGAGCCCTCACTTCCTGTAATTTCATCTGGATGTTTGAATTTGTTCCTGCAATTTTTAGGAAATAGCGGGAAAAATGAAACTATGTTGAAGTTATTC TACAAAATGCTTGCATCGGGTGCTGAAGTTAACTTCAATACTTATTCTATTTTATTGAAGAACCTTTTATCCTCGGGAAATTGGAGGAAATATTTAGAGG TACTGGAATGGATGGAAGATGCAGGAATTTATCCATCAAATGGAATGTACCGCGATTTATCCTCCTTTTCGCAAAGGTGTTGTGGGGAAGAAAATGCTGC AATCATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATCAGGGAACCAAGTCTCTCCAAGCCAAACCGAATCTCCCACTCTTTGTTGATCATCATCATGG GATGGATATTTTGCTTACCATAACACTATGTCCCATACTACTGAGAGTATTTCATCCCAGAAGTTGGAACTCAATTTATTGGATCATTTGCTATCCTTTG TAACTCACATTATGTTCCTTTGTAGATAATAGTTTCAGACTCTAATTTACTCATTTTTACTTCTTTTCACGCACTTGTAATTCACATGTACCTATGGCTT CATGTGACATGGAACTTATGGTAGAGATTCTCGTATAATATTTGATAATAAAGTATCTCATAGTATAAGGAGATAAACTATTCCCTGCCAATAAAATTAT AACATGTGTCATGTATCAACATTTTCTACAAAAATATTTCTAAAGTTAAAAAAATAGTGCACATGTCATATTTTTTGTTGGCCAAAGGAGATAAGTTATC TCCATGTTATAATATTCTTATATAATGTAATGATATATATGTATTAGTATTGATAGTGTATAAGTTTGATACATCATCAATTTATTATTTTAACTATTAA AAAA
• Tissue: pods
• Gene name: LI_gene_184979;
• Additional information: details;

Expression of Ll_transcript_379861

FPKM

• PAB: 1
• PNAB: 2.6
• PS1: 1.7
• PS2: 0.5
• PS3: 1.8
• PW1: 1.8
• PW2: 1
• PW3: 1.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_379861

• Blastp: Pentatricopeptide repeat-containing protein At2g41720 from Arabidopsis with 69.45% of identity
• Blastx: Pentatricopeptide repeat-containing protein At2g41720 from Arabidopsis with 69.45% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT2G41720)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434154.1)
• Pfam: PPR repeat family (PF13041.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;