| Id Trinity | TRINITY_DN51446_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_380118 |
| Sequence | AGTGTAGAGTGCAGAGGCATTGAGGTTTGAAGCTTTATTTCTTTGTTTGTTCAAAGTTTGAATATTTGAGGGAAGTCATGAAACATGTAATGAAGGAAAG TGGATGAGGCATAATCCAACAATAACAAATTGTGACTATAATGGCACTTTCTATGCACAAAGACAACAACTTCAACATAGATTCAAGCAAGTATGTTAGG TACACACCAGAACAAGTTGATGCTTTAGAAAAGGTCTATGCTGAATGCCCCAAACCCACTTCTCTAACCAGACAACAACTCATTAGGGACTCTCCTATTC TCTCTAACATTGACCCTAAACAGCTCAAAGTCTGGTTTCAGAATCGCAGATGTCGTGAGAAGCAAAGGAAGGAAGCTTCTCTTTTGCAGACAGTGAATAA AAAGCTTTCTGCAATGAACAAGTTGTTGATGGAAGAGAATGACCGTCTCCAAAAGCAGGTTTCCAATTTAGTTTATGAAAATGGTTATATGAAGCAACAG ATAACCACTGTATCTGCTACTACCACTGCAGACAATAGTTGTAAGCCTGTGGCGATGACTGGTCAAAATCAACAGCAAAACCCAACACCTCATCAACATC CTCAAAGGGATGCTAACAACCCAGCTGGTCTTCTCGCCATCGCGGAGGAGACCCTGGCAGAGTTCCTGTCCAAGGCTACTGGAACTGCTGTCGACTGGGT CCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGCATCGTCGCTGTTTCTCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTTGTGAGT CTAGAACCCACAAAGGTTGCCGAGATTCTTAAAGATCGACTATCTTGGTATCGTGACTGCCGATGCCTTGACGTGTTGAGCATAGCCCCTACGGGAAATG GAGGCACAATAGAGCTCATGTACATGCAGACTTATGCACCAACAACATTGGCTGCAGCGCGTGACTTCTGGACACTGAGATACACCACAAGTTTGGAAGA TGGAAGTCTTGTGATATGTGAGAGATCATTGACTACTTCAACTGGAGGCCCTACGGGTCCCCCGTCTTCAAGCTTTGTAAGAGCTGAAATGCTTCCTAGT GGCTATCTAATCAGACCCTGTGATGGCGGTGGATCCATTATTCATATTGTTGATCATATTGATTTAGACGTCTGGAGTGTCCCCGAAATACTGAGGCCCC TCTACGAGTCGTCAAAAATCTTGGCTCAGAAATTGACTATTGCTGCCTTGCAACACATTAGACAAATAGCACAAGAATCAAGTGGAGAAATTCAGTATGG TGGGGGACGCCAGCCCGCTGTTTTGAGGACACTAAGTCAGAGACTTTGCAGGGGCTTTAATGATGCTGTGAATGGGTTTGTTGATGATGGTTGGTCTCTG ATTGGTAATGATGGGGTCGATGATGTGACTATTGCTGTAAACTCATCCCCCAACAAATTCTTCGGGTCCCAGTACAATTCGTCAATGTTCCCGTCATTTG CTGGTGGGGTCCTGTGTGCCAAAGCATCAATGCTACTTCAGAATGTTCCCCCTCCTTTGCTTGTTCGCTTTTTGAGGGAGCATCGATCTGAATGGGCTGA TTATGGTGTTGATGCATATTCTGCTGCATGTCATAAGGCTAGTCCCTATGCAGTTCCTTCTGCAAGGCCTGCCGATTTCCCCACCAGCCAGATCATTTTA CCTCTTGCCCATACTATTGAACACGAGGAGTTCTTGGAGGTAGTTCGTATAGAAGGCCATGCATTCCCTCCTGATGATGTGTCGTTGGCACGAGATATGT ATCTTCTGCAGCTGTGCAGTGGGGTTGATGAAAATTCGATTGGGGCATGTGCTCAACTAGTTTTTGCTCCTATTGATGAATCATTTGCCGATGATGCTCC TTTACTGCCTTCTGGTTTTCATATCATACCACTGGCTCCTAAAACAGATGCTCCGGCCACAACTAGGACTTTGGATTTGACATCAACTCTTGAAGTAGGA TCTGGTAGTATTCGTCCAGCTGGTGAAACTGATTACAACCTTAGGTCGGTCCTTACCATTGCATTCCAATTTACCTTCGAGAACCATCTGCGAGACAATG TGGCTGCTATGGCTCGCCAGTACGTGCGGACTGTTGTGGGATCTGTTCAAAGGGTTGCCATGGCAATTGCTCCTGCTCGTCCCAGTACCCAGCTGGTGCC AAAGTCTCTTCCATGTTCACCCGAGGCTCTTACTTTAGCTCGATGGATTTGTAGAAGCTACAGGATCCACACCAGTGCCGAACTCTTTCGACTTGAGCCA ACATCTGGCGATGCAATCTTGAAGCAACTCTGGCACCATTCCGATGCAATCGTGTGCTGTTCCGTAAAAACAAATGCTTCTCCAATATTCACCTTTGCAA ACCAAGCTGGACTTGACATGCTTGAAACTACTCTAGTTGCCCTTCAAGATATAATGCTTGATAAAGTTCTTGATGAAGCTGGTAGAAAGGTCCTTTGCTC TGAATTCTCCAACATAATGCAACAAGGATTTGCATATCTGCCACCAGGAATATGTGTATCCAGTATGAATCGTCCAGTATCTTATGAACAAGCCATTGCA TGGAAAGTTCTGAATGATGATGATTCCAATCACTGCTTGGCTTTTATGTTCATGAACTGGTCCTTTGTCTAATGGTAGAAACCATCTTTATCAAGATACT TATTATTATTAATTATTGTATTATGAAGTTATATTCAGGTCTTAATTACCAGAAACTATGACAGACCAATGTACTAATGACATGATTTCATGCTGGCTAA TATTTTATATTAATATGCCATTATTAGCTATATAGTTTTTGCTTTAGTCCATTTTGAAGTACCATGTTACTTTCTTGGTATATAAAAATTCTAATTAATA TGTTGAATCCCTTAGTTGATTAGCTTTATTCCCTTGTTAAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_184998; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_380118
| Blastp | Homeobox-leucine zipper protein HOX32 from Oryza sativa with 77.15% of identity |
|---|---|
| Blastx | Homeobox-leucine zipper protein ATHB-14 from Arabidopsis with 75.7% of identity |
| Eggnog | homeobox-leucine zipper protein(ENOG410XQ3R) |
| Kegg | Link to kegg annotations (4333544) |
| CantataDB | - |
| Mirbase | cln-MIR166 (MI0022568) |
| Ncbi protein | Link to NCBI protein (XP_019419795.1) |
| Pfam | Homeobox domain (PF00046.28) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |